Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g2309 ATGGTACCGGGTGTCGGGGACTCGTTTTCTTTGGCCTTCGGACTTAAAAAGTTATTAGAGTTTTGCAATGATTTGCGTGCACAGCTACTACTGGTTTGCGGTGATGTGCATGGTCAATATTCTGATCTTTTGAGACTTTTCGAGTATGGTGGATTACCCCCTCATGCCAACTATTTGTTTTTGGGGGATTATGTGGATAGAGGGAAACAAAGTTTAGAAACAATATGCCTTCTCCTGGCTTATAAAATAAAATATCCTGAGAACTTTTTCCTTTTGAGAGGGAACCATGAATGTGCTTCTATAAATAGAATATATGGGTTTTATGATGAGTGTAAGAGAAGATTCAATGTAAGGTTGTGGAAGACATTTACAGATTGCTTCAACTGCCTGCCAGTGGCAGCCCTTATTGATGAAAAGATTCTGTGTATGCATGGGGGACTTTCGCCTGACTTGCATCATTTGGATCAAATAAGAAATCTACAGCGACCCGCTGTTGTGCCAGATACAGGTTTGCTTTGTGATCTCCTTTGGTCAGACCCGAGCAAAGATGTTCAAGGCTGGGGAATGAATGACAGGGGAGTTTCGTATACATTTGGTGCTGATAAGGTGTCAGAGTTTCTTCAGAAGCATGATCTAGACCTTATATGTCGTGCTCATCAGGTTGTAGAGGATGGATACGAGTTCTTTGCTAACCGACAGCTTGTAACGATATTCTCAGCTCCTAATTATTGTGGGGAGTTTGACAATGCCGGTGCCATGATGAGTGTTGATGAGACGTTAATGTGTTCTTTCCAAATATTAAAGCCTGATGATAAAATACCGAAGCTCAATTTTGGAAGTACAACCACTGCTAAGCCTGGGAACTCTCCAGCAGGTGTCAAGTTTGAAATCAATTTTGGTGGAAGATTAGCTGGTTCAACAGGCTGGCGAAACAATTTGGTAGTTTCTGTTTTTTTTTTCTGGGTTGCCTCTCTGTTTTTGTCGAAACCCAAGATAACTTTGGAACCTGTGGAAATTGATTTCGAGGCTCTGAAGTTTACTTCATCCGAGACAAAAGGGTTCTGGCTTCTGGCAATTTTGCCGTGTCTCTGCTATCACGCCTGCGAAGACTTTTCCTCAGGGTTCTTCTAA 1131 0.42 MVPGVGDSFSLAFGLKKLLEFCNDLRAQLLLVCGDVHGQYSDLLRLFEYGGLPPHANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTDCFNCLPVAALIDEKILCMHGGLSPDLHHLDQIRNLQRPAVVPDTGLLCDLLWSDPSKDVQGWGMNDRGVSYTFGADKVSEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPDDKIPKLNFGSTTTAKPGNSPAGVKFEINFGGRLAGSTGWRNNLVVSVFFFWVASLFLSKPKITLEPVEIDFEALKFTSSETKGFWLLAILPCLCYHACEDFSSGFF 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g2309 376 SUPERFAMILY Metallo-dependent phosphatases 30 274 IPR029052 -
Lele14g2309 376 ProSitePatterns Serine/threonine specific protein phosphatases signature. 92 97 IPR006186 GO:0016787
Lele14g2309 376 Gene3D - 15 279 IPR029052 -
Lele14g2309 376 PRINTS Serine/threonine phosphatase family signature 154 181 IPR006186 GO:0016787
Lele14g2309 376 PRINTS Serine/threonine phosphatase family signature 91 115 IPR006186 GO:0016787
Lele14g2309 376 PRINTS Serine/threonine phosphatase family signature 58 85 IPR006186 GO:0016787
Lele14g2309 376 PRINTS Serine/threonine phosphatase family signature 211 231 IPR006186 GO:0016787
Lele14g2309 376 PRINTS Serine/threonine phosphatase family signature 29 56 IPR006186 GO:0016787
Lele14g2309 376 PRINTS Serine/threonine phosphatase family signature 233 249 IPR006186 GO:0016787
Lele14g2309 376 PRINTS Serine/threonine phosphatase family signature 125 151 IPR006186 GO:0016787
Lele14g2309 376 FunFam Serine/threonine-protein phosphatase 28 280 - -
Lele14g2309 376 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 30 271 - -
Lele14g2309 376 Pfam Calcineurin-like phosphoesterase 30 221 IPR004843 GO:0016787
Lele14g2309 376 SMART pp2a_7 13 271 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g2309 Lele-ChrLele14 27780688 27787024 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g2309 30 217 Calmodulin-binding Proteins AT5G63870 31.390 7.12e-27 106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2379 13 29426618 29430729 Lele14g2309 14 27780688 27787024 ECH
Lele14g2309 14 27780688 27787024 Lele14g2309 14 27780688 27787024 ECH
Lele14g2309 14 27780688 27787024 Lele15g0041 15 239525 245291 hybridization
Lele14g2309 14 27780688 27787024 Lele16g0041 16 276687 278160 hybridization