Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g2305 ATGTGGCGGCGTCGCCAGCAGTGCAAATTCCTCCCGCTCCCCTGTATCCCTCTCCCGCACCGTTCGCTGGTTTGTATCCTCTGCCACAGTATCAGCAGGGGCAGCAACTATTTCGAAGGGATGCACAGACAATTACACCTGAGGCTCTTGAGAGTGTCAAGGCGGCCATTGCAAATAGCGATTGAGCGTAATGTGGAGACCAGAAAGAAAGCAATTCCTCGCAAAGCTGCGGGCCAAACATGGAGGATCCCACTCTTGCAGATTGGCCAGAAAAATGATTATCGGCTCTTTTGTGGTGATCTTGGATATGAGGTGAATGATGATGTGCTTTCAAAAACATTTTCTCGATTTCCTTCCTTTAAGATGGACCGAGTTGTCAGAGACAAGCGGACTGGAAAAACAAAGGGTTATGAATTTGTAAGCTTTGCCAATCCTGCTGACCTTGCTGCTGCTCTTAAAGAAATGAATGGTCAGTTATTTGCAAACTACGGCTGCGCTTGTCTTTTCTCCCCATTTCACCTGATATATAATAATTTTAACTAG 543 0.4641 MWRRRQQCKFLPLPCIPLPHRSLVCILCHSISRGSNYFEGMHRQLHLRLLRVSRRPLQIAIERNVETRKKAIPRKAAGQTWRIPLLQIGQKNDYRLFCGDLGYEVNDDVLSKTFSRFPSFKMDRVVRDKRTGKTKGYEFVSFANPADLAAALKEMNGQLFANYGCACLFSPFHLIYNNFN 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g2305 180 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 164 IPR000504 GO:0003723
Lele14g2305 180 SUPERFAMILY RNA-binding domain, RBD 83 162 IPR035979 GO:0003676
Lele14g2305 180 SMART rrm1_1 95 170 IPR000504 GO:0003723
Lele14g2305 180 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 162 IPR000504 GO:0003723
Lele14g2305 180 Gene3D - 54 165 IPR012677 -
Lele14g2305 180 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 66 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g2305 Lele-ChrLele14 27740865 27743006 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g2305 90 156 Eukaryotic Initiation Factors Gene Family AT4G34110 37.313 2.77e-08 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g2305 14 27740865 27743006 Lele15g0046 15 277323 281352 hybridization