LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele14g2266	ATGAATGGTGTCGCACACCTCGAGCCGGATTACTCCGAATTTGTCGAAGTTGATCCCACCGGCAGATATGGCAGATACAATGAAATTCTCGGCAAGGGAGCCTCAAAGACAGTATATAGAGCATTCGATGAGTATCAAGGTATTGAAGTTGCCTGGAACCAAGTCAAGGTGTATGATTTCCTGCAAAGCCCTGAAGATCTTGAGAGGCTCTACTGTGAAATTCATCTACTGAAAACGTTGAAGCACAAAAACATCATGAAATTTTATACGTCTTGGGTCGATACTGCTAATAGGAATATCAACTTCGTGACTGAGATGTTCACTTCTGGTACTCTTAGACAGTATAGGCTAAAGCACAAAAGAGTAAACATCAGAGCGGTGAAGCATTGGTGTATACAGATCCTGAGAGGACTTCTCTATCTCCATAGCCATGACCCACCTGTGATTCATAGAGATCTCAAATGTGATAATATTTTTGTTAATGGACACCAAGGCGAAGTGAAGATTGGTGATCTTGGCCTGGCAGCAATTCTCCGGAAATCCCATGCTGCACATTGTGTCGGAACGCCTGAGTTCATGGCCCCAGAAGTCTATGAAGAAGCATATAATGAATTAGTTGATATATATTCCTTTGGCATGTGCATACTTGAAATGGTCACATTTGAATATCCTTATAGTGAATGTACTCATCCGGCGCAAATCTACAAGAAAGTCATTTCTGGGAAAAAACCAGATGCTTTATATAAAGTCAAGGATCCAGAAGTGAGACAGTTTGTTGAGAAATGCTTAGTGACTGTGTCTCTGAGGCTCTCAGCAAGAGAGCTTCTAGATGACCCATTCCTCCAAATAGATGATTACGAATCATTATTAAGGCCAGCAGACAGCGGGGAATGTGATGACATGGGTCCTCTCATCCGACACCCATTCTATGGTTTTCATCGAAGTTGTAGTAATATGAGTAATGAATACTATAATGGATATGGCTATGATGGAGATTGGTTTCCTCATCCAACTGAGATTGAACCTACTGGAATTGAACTCTTTCAATACCAGGATGATGAAACCTCTGAAGATGTTGACATAAGCATCAAAGGCAAGAGGAAAGATGATGGCGCCATCTTTTTGAGACTAAGAATTGCAGATAAAGAAGGGCATATTCGAAATATTTATTTTCCATTTGACATAGAGACTGATACAGCCATAAGTGTGGCTACTGAAATGGTTGCAGAACTTGACATGACTGACCAGGATGTCTCCAGAATAGCAGATATGATAGATGGGGAAATTGCTTCCGTGGTACCTGAATGGAGGCCAGGACCAGGAATTGAGGAAACTCCACGTTTTGCAAATCAAGGTTTCTGCCACAACTGCGCATCTAATCATACTTCCAGTGGTTCCCTTGGGGATTTTCTGTCACATAATCCAGGCACCAAGAACACGCAATTTCTTCATTGCTGTAGGCATAAATGTGCTTCAATGCATGGCCGGTTTGAGGAGATCACATTTGACTCTGACGAGTATGACAATCATGTTAGAGAGAATGCTGATGCGCCTAACATATCAAGTCAATCAGATTGCTTGCAGTATCGGGAGTTATGGAATCAACATGAAAGTCGTGAACTTAGTCCCGTGGAATCTGAAAGAAGTCACTCTGATGAACAAAATGAACAATTAGATAAATCAGTATCAGCGGAAGGTGAGGGATGCTATGCTTGGGACTACAAGTTCGCCCCCAATGAAAGAACTTCCCTGCGGAACTTATCAGTAACGCATTATTTTACACCAATGAATTCGTTTTATTGTGATCTTGAGGAAGAATGTGAGAAAGAGATCCAGCAGGAGCTAAGATGGCTCAAAGCAAAATACCAAATGGAGTTGAAGGAACTCAGGGATCGACAGCTTGGGCTAACAGTAAAATCTTCGGATGAGAGAAAGCACACATCAGAATGTGGAATATCATCACCTTCACAAATACACACTTTTGAAAGAGGAAACAGTTCGAAACCCTTTGCTAATTGTGGTTTCTTGAAAAAGAGCAGCCCCAATTCGGACACCCAAAGGGCCCGAAATTGTGAGGCGATGGATTCACCTGGAGGCGAGGTTACTGCTAAGAGTTCTTGCACAGGCTCATTGCTTCCCCACTCCCTACACAGGACTGTTTCCCTCCCAGTTGATGCCGTTGATATATAA	2190	0.4233	MNGVAHLEPDYSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYQGIEVAWNQVKVYDFLQSPEDLERLYCEIHLLKTLKHKNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCIQILRGLLYLHSHDPPVIHRDLKCDNIFVNGHQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEEAYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVISGKKPDALYKVKDPEVRQFVEKCLVTVSLRLSARELLDDPFLQIDDYESLLRPADSGECDDMGPLIRHPFYGFHRSCSNMSNEYYNGYGYDGDWFPHPTEIEPTGIELFQYQDDETSEDVDISIKGKRKDDGAIFLRLRIADKEGHIRNIYFPFDIETDTAISVATEMVAELDMTDQDVSRIADMIDGEIASVVPEWRPGPGIEETPRFANQGFCHNCASNHTSSGSLGDFLSHNPGTKNTQFLHCCRHKCASMHGRFEEITFDSDEYDNHVRENADAPNISSQSDCLQYRELWNQHESRELSPVESERSHSDEQNEQLDKSVSAEGEGCYAWDYKFAPNERTSLRNLSVTHYFTPMNSFYCDLEEECEKEIQQELRWLKAKYQMELKELRDRQLGLTVKSSDERKHTSECGISSPSQIHTFERGNSSKPFANCGFLKKSSPNSDTQRARNCEAMDSPGGEVTAKSSCTGSLLPHSLHRTVSLPVDAVDI	729

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele14g2266	729	Gene3D	-	371	436	-	-
	Lele14g2266	729	MobiDBLite	consensus disorder prediction	538	560	-	-
	Lele14g2266	729	CDD	STKc_WNK	22	281	-	-
	Lele14g2266	729	Pfam	Oxidative-stress-responsive kinase 1 C-terminal domain	374	427	IPR024678	GO:0004674\|GO:0005524
	Lele14g2266	729	SMART	serkin_6	24	281	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele14g2266	729	Gene3D	Transferase(Phosphotransferase) domain 1	107	286	-	-
	Lele14g2266	729	Coils	Coil	612	632	-	-
	Lele14g2266	729	FunFam	probable serine/threonine-protein kinase WNK9	107	286	-	-
	Lele14g2266	729	SUPERFAMILY	Protein kinase-like (PK-like)	27	282	IPR011009	-
	Lele14g2266	729	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	148	160	IPR008271	GO:0004672\|GO:0006468
	Lele14g2266	729	Gene3D	Phosphorylase Kinase; domain 1	9	105	-	-
	Lele14g2266	729	MobiDBLite	consensus disorder prediction	538	562	-	-
	Lele14g2266	729	ProSiteProfiles	Protein kinase domain profile.	24	281	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele14g2266	729	FunFam	Probable serine/threonine-protein kinase WNK1	9	105	-	-
	Lele14g2266	729	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED	12	655	-	-
	Lele14g2266	729	Pfam	Protein kinase domain	27	281	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele14g2266	Lele-ChrLele14	27540081	27543136	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele14g2266	1	500	MAP Kinase Kinase Kinase	AT3G22420	57.273	0.0	595

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	WNK_NRBP	Lele14g2266		Pkinase	1.9e-48	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele14g2266	14	27540081	27543136	Lele14g2266	14	27540081	27543136	ECH
	Lele14g2266	14	27540081	27543136	Lele15g0080	15	473936	476992	hybridization
	Lele14g2266	14	27540081	27543136	Lele16g0087	16	515856	518907	hybridization