Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g2253 ATGGTGATAATTTCCAGCAGCCCCGGAGCAGAAGGAGAAGTGTGCGGAGAAGCACTTAGTGGGTGGATTCCGCGGAAGGCTGACACTTTTGAGAAAATTGATAAGATTGGGCAAGGAACGTATAGCAATGTGTACAAAGCTAAAGATATGTTGACTGGTAAAATTGTTGCATTAAAGAAGGTTCGATTTGACAATTTGGAGCCTGAGAGTGTGAAGTTCATGGCTAGAGAGATTCTTGTTTTGCGAAGATTGGATCATCCCAATGTTGTAAAGTTGGAAGGTTTAGTTACCTCAAGAATGTCCTGGAGTTTGTATTTGGTGTTTACTTACATGGAGCATGATTTGGCTGGACTTGCTGCAAGCCCAGGAATCAAGTTCACTGAGCCTCAGGTCAAATGTTACATGCACCAACTATTATCAGGACTTGAGCATTGTCATAACTGTCGAGTACTTCACCGTGATATTAAAGGATCAAATCTTCTTCTTGACAACAATGGAATACTTAAGATAGCTGACTTTGGATTGGCATCTTTCTTTGATCCTAACCGGAAGCTGCCGATGACTAATCGTGTAGTTACACTTTGGTATCGACCTCTTGAGTTGCTTCTTGGTGCCACAGAATATGGTGTGGGAGTGGACCTCTGGAGTGCAGGTTGCATTTTGGGAGAGTTATTGGCAGGAAAGCCAATTATGCCTGGTCGCACAGAGGTGGAGCAACTGCATAAGATATACAAACTATGTGGGTCACCCTCAGATGAATACTGGAAGAAGTCAAAGTTGCCCAATGCTACCTTGTTTAAACCTCGAGAGCGTTACAAGAGATGCATACGAGATGCATTTAAAGATTTTCCACCTTCTGCACTTACACTTATGGATACCCTTCTTGCCCTTGATCCAGCAGAACGGAAGACCGCATCAGATGCACTAAGAAGTGAGTTCTTCACCACAGAACCTTATGCCTGTGATCCTTCTAGTCTTCCGAAATATCCGCCAAGCAAGGAAATGGATGCTAAACGACGAGATGATGAAGCGAGGAGACAACGAGCTGCAGGCAAAGCTCAAGTTGATGGTGCAAAGAAACTCCGAACACGCAATGGAGCCAAACTTAATCTTGCTCCTGAAGCCAATGCTGAGCTTCGATCCAATATTGACAGAAGGCGTCTAATAACTCGTGCAAATGCGAAGAGCAAGAGTGAGAAGTTCCCACCACCACATCAAGATGGACAACTTGGCTTTCCTTTGGGCTCTTCACATCATATTGATGCAGATATCGTTCCTTCTGATGTCTCTTTTAGTTCAACCTCATTTACCTATTCAAAAGAACCATTCCAAGCTTGGTCAGGTCCCATTGCTGTGCCCAAGCAGAAGAAACATGCCCCTGGTGGTGCAGTGGATTTATCAAAACAACGTGCAAGTGCCCTCAAGGATAAACGCCCGTTGCTTGCCTGCTTCCAGAACGAAGTATCGCTTAACTCAACCCATGAGATAGGTAGCATTCTGATGGTACAGATGAACACCCTGAAATGTGGGTAG 1533 0.4449 MVIISSSPGAEGEVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDMLTGKIVALKKVRFDNLEPESVKFMAREILVLRRLDHPNVVKLEGLVTSRMSWSLYLVFTYMEHDLAGLAASPGIKFTEPQVKCYMHQLLSGLEHCHNCRVLHRDIKGSNLLLDNNGILKIADFGLASFFDPNRKLPMTNRVVTLWYRPLELLLGATEYGVGVDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPRERYKRCIRDAFKDFPPSALTLMDTLLALDPAERKTASDALRSEFFTTEPYACDPSSLPKYPPSKEMDAKRRDDEARRQRAAGKAQVDGAKKLRTRNGAKLNLAPEANAELRSNIDRRRLITRANAKSKSEKFPPPHQDGQLGFPLGSSHHIDADIVPSDVSFSSTSFTYSKEPFQAWSGPIAVPKQKKHAPGGAVDLSKQRASALKDKRPLLACFQNEVSLNSTHEIGSILMVQMNTLKCG 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g2253 510 CDD STKc_CDK9_like 30 314 - -
Lele14g2253 510 Pfam Protein kinase domain 30 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele14g2253 510 MobiDBLite consensus disorder prediction 321 358 - -
Lele14g2253 510 SMART serkin_6 30 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele14g2253 510 SUPERFAMILY Protein kinase-like (PK-like) 25 321 IPR011009 -
Lele14g2253 510 MobiDBLite consensus disorder prediction 332 358 - -
Lele14g2253 510 Gene3D Transferase(Phosphotransferase) domain 1 113 354 - -
Lele14g2253 510 ProSitePatterns Protein kinases ATP-binding region signature. 36 59 IPR017441 GO:0005524
Lele14g2253 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Lele14g2253 510 ProSiteProfiles Protein kinase domain profile. 30 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele14g2253 510 Gene3D Phosphorylase Kinase; domain 1 17 112 - -
Lele14g2253 510 FunFam probable serine/threonine-protein kinase At1g54610 17 112 - -
Lele14g2253 510 PANTHER CELL DIVISION PROTEIN KINASE 28 318 - -
Lele14g2253 510 FunFam probable serine/threonine-protein kinase At1g54610 113 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g2253 Lele-ChrLele14 27443859 27448047 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g2253 22 354 Core Cell Cycle Gene Families AT5G10270 51.289 4.03e-119 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lele14g2253 Pkinase 4.3e-64 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g2253 14 27443859 27448047 Lele13g2323 13 29112465 29121024 CCT
Lele14g2253 14 27443859 27448047 Lele14g2255 14 27453701 27461704 CCT
Lele14g2253 14 27443859 27448047 Lele15g0089 15 548889 556135 CCT
Lele14g2253 14 27443859 27448047 Lele16g0099 16 591726 601793 CCT
Lele13g2309 13 29022590 29027132 Lele14g2253 14 27443859 27448047 CCT
Lele14g2240 14 27350822 27358848 Lele14g2253 14 27443859 27448047 CCT
Lele15g0105 15 634251 635320 Lele14g2253 14 27443859 27448047 CCT
Lele16g0114 16 698369 699478 Lele14g2253 14 27443859 27448047 CCT
Lele14g2253 14 27443859 27448047 Lele15g0093 15 570962 574823 hybridization