Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g2225 ATGTGTGTCCCTGAGGGAGAGATAGACAGCCAGACGTCCATGGCGCTCGAAGCCGTTGTTTTCCCTCCGGACTACCCTTTTGGCTATGGCGCTTCCAAGGACCCCTACCCTCTCTGGCCCCTTCAAGACGATTTCAGCCTTCCCAAACAGGAAGACCACCACGGCTTTCTGAATCTTCTCGACAACCAAACAGAAAACTATGGCTTCGGAGTCTGGTCTAATATTTGCTCTTCTTCTCCCCCACCGTCAGTGTTGCCCCCCTCGAGCGAGCTGCGTCTCCCGAATCACGCGACATCTGACACCAGTAACAACCCAACTCCCTCGTCTGAATCACTCCACGTGGATTCCTCGAATTTTCGTCCCAAGAGACGCAGGGCCAGGACCCGGAAGAACAAGGAGGAGATCGAGAACCAGAGAATGACGCACATTGCGGTGGAGCGCAATCGGAGAAAACAGATGAACGAGTATCTCTCTGTTCTTCGCTCTCTCATGCCCGACTCCTACGTCCAAAGGGGAGATCAAGCTTCCATAATAGGGGGTGCTATTAACTTTGTGAAGGAGCTGGAGCAGAGGCTGCAATTTATGGGGGGTCAGAAAGAAACAGAGGCGAAATCTCAGAGTAAGCCGTTTTCTGAGTTCTTCACGTTTCCTCAGTATTCGACGAGCCCAAGCGGAAGCGCCGAGTGTTCGGCGACGGGGGAGAAAGTGGGGGAGGTATCGTCGGAGGCGGGCATCGCAGATATAGAAGTGACGATGGTGGAGAGTCACGCGAATCTGAAAATACGGTCCAAGAAGAGGCCGAAGCAGCTGTTGAAGATGGTGTCGGCGTTGTACAGCATGAGCCTCACGATCTTGCATCTCAACGTGACGACCACCGCCGATATTGTGCTCTACTGCATGAGCGTCAAGGTATATGTACACATGGACATGTCTCGGTGCGAAAATTGGGTGGAAGCAGTTAGAGGAAGAGAGCAAGCTGGGATCAGTGGAGGAGATAGCGGGAGCAGTGTACAAAACGTTGGAGAGGATCGAACAAGAGTGTGTGCAGAATAA 1053 0.528 MCVPEGEIDSQTSMALEAVVFPPDYPFGYGASKDPYPLWPLQDDFSLPKQEDHHGFLNLLDNQTENYGFGVWSNICSSSPPPSVLPPSSELRLPNHATSDTSNNPTPSSESLHVDSSNFRPKRRRARTRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQFMGGQKETEAKSQSKPFSEFFTFPQYSTSPSGSAECSATGEKVGEVSSEAGIADIEVTMVESHANLKIRSKKRPKQLLKMVSALYSMSLTILHLNVTTTADIVLYCMSVKVYVHMDMSRCENWVEAVRGREQAGISGGDSGSSVQNVGEDRTRVCAE 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g2225 350 MobiDBLite consensus disorder prediction 326 350 - -
Lele14g2225 350 MobiDBLite consensus disorder prediction 83 132 - -
Lele14g2225 350 MobiDBLite consensus disorder prediction 92 115 - -
Lele14g2225 350 Pfam Helix-loop-helix DNA-binding domain 138 189 IPR011598 GO:0046983
Lele14g2225 350 PANTHER MAX DIMERIZATION, MAD 79 311 - -
Lele14g2225 350 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 188 IPR011598 GO:0046983
Lele14g2225 350 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 137 206 IPR036638 GO:0046983
Lele14g2225 350 CDD bHLH_AtFAMA_like 140 208 - -
Lele14g2225 350 SMART finulus 143 194 IPR011598 GO:0046983
Lele14g2225 350 Gene3D - 122 205 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g2225 Lele-ChrLele14 27291161 27292380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g2225 14 305 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 48.428 3.33e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele14g2225 HLH 5e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2285 13 28889292 28892007 Lele14g2225 14 27291161 27292380 CCT
Lele15g0128 15 768910 771646 Lele14g2225 14 27291161 27292380 CCT
Lele16g0137 16 800766 803188 Lele14g2225 14 27291161 27292380 CCT
Lele14g2225 14 27291161 27292380 Lele14g2225 14 27291161 27292380 ECH
Lele14g2225 14 27291161 27292380 Lele15g0118 15 718688 719917 hybridization
Lele14g2225 14 27291161 27292380 Lele16g0129 16 759080 760324 hybridization