Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g2218 ATGGCTTCCGGTGATCAGCAATTTCCCCCACAGAAACAAGACAAACTTCCCGGTAAAGAGCATGCTATGGATCCGATACCTCAATTCACCATCCCCGACTACAAGCCCTCAAATAAACTTCAGGGGAAGATGGCTCTGATTACTGGAGGTGACTCTGGGATTGGACGAGCCGTATGCAATTTATTTGCGTTGGAGGGTGCCAGCGTGGCATTCACATATGTGAAGGGACATGAAGAGAAGGACGCGAAGGACACGCTTGAAATGATCAAGAAGGCAAAAATTGCGGATGCCAAGGAGCCCATAGCCATACCAGCCGACTTGGGTTTTGATGAAAACTGCAAGAAAGTAGTGGATGAGGTCGTCAAAGCGTTCGGCTGCATGGACATTCTGATCAACAATGCAGCTGAGCAATACGAGGCTGGATCTGTGGAGGAGATTGACGAGAAAAGGCTCGAGAGGGTGTTCAGAACTAATATCTTCTCCTATTTCTTCGTGACCAGGCATGCCCTGAAGCACATGAAGGAAGGAAGCAGCATCATCAACACGACATCAGTGACTGCATACAAAGGAAACGCCAAATTACTAGACTACACGGCGACGAAGGGTGCGATTGTGGCATTTACGAGGGGTCTGTCTCTTCAATTGGTGAGCAAGGGAATAAGAGTGAACGGGGTTGCCCCGGGACCCATATGGACTCCGTTAATACCAGCTTCCTTCAAGGAGGAAGAAGTATCTCAGTTTGGAGCTCAGGTGCCGATGAAGAGAGCTGGCCAGCCTATTGAGGTTGCTCCCTCCTATGTATTTCTTGCCTGCAATCAGTGCTCCTCTTACATTAGTGGCCAAGTCCTTCACCCCAATGGTGGAACTGTTGTAAATGGCTGA 882 0.4909 MASGDQQFPPQKQDKLPGKEHAMDPIPQFTIPDYKPSNKLQGKMALITGGDSGIGRAVCNLFALEGASVAFTYVKGHEEKDAKDTLEMIKKAKIADAKEPIAIPADLGFDENCKKVVDEVVKAFGCMDILINNAAEQYEAGSVEEIDEKRLERVFRTNIFSYFFVTRHALKHMKEGSSIINTTSVTAYKGNAKLLDYTATKGAIVAFTRGLSLQLVSKGIRVNGVAPGPIWTPLIPASFKEEEVSQFGAQVPMKRAGQPIEVAPSYVFLACNQCSSYISGQVLHPNGGTVVNG 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g2218 293 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 41 291 IPR036291 -
Lele14g2218 293 PRINTS Glucose/ribitol dehydrogenase family signature 197 216 IPR002347 -
Lele14g2218 293 PRINTS Glucose/ribitol dehydrogenase family signature 171 187 IPR002347 -
Lele14g2218 293 PRINTS Glucose/ribitol dehydrogenase family signature 44 61 IPR002347 -
Lele14g2218 293 PRINTS Glucose/ribitol dehydrogenase family signature 218 235 IPR002347 -
Lele14g2218 293 PRINTS Glucose/ribitol dehydrogenase family signature 125 136 IPR002347 -
Lele14g2218 293 PRINTS Glucose/ribitol dehydrogenase family signature 252 272 IPR002347 -
Lele14g2218 293 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 184 212 IPR020904 GO:0016491
Lele14g2218 293 Gene3D - 2 291 - -
Lele14g2218 293 CDD SDR_c1 17 292 - -
Lele14g2218 293 Pfam Enoyl-(Acyl carrier protein) reductase 52 288 - -
Lele14g2218 293 FunFam Short-chain dehydrogenase reductase 31 292 - -
Lele14g2218 293 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 197 216 IPR002347 -
Lele14g2218 293 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 177 185 IPR002347 -
Lele14g2218 293 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 136 IPR002347 -
Lele14g2218 293 PANTHER NADPH-DEPENDENT ALDEHYDE REDUCTASE-LIKE PROTEIN, CHLOROPLASTIC-RELATED 17 288 - -
Lele14g2218 293 MobiDBLite consensus disorder prediction 1 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g2218 Lele-ChrLele14 27237586 27238723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g2218 40 293 Miscellaneous Gene Families AT2G29290 31.154 1.37e-24 98.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2274 13 28841051 28842515 Lele14g2218 14 27237586 27238723 CCT
Lele14g2209 14 27185234 27186701 Lele14g2218 14 27237586 27238723 CCT
Lele15g0137 15 821579 823031 Lele14g2218 14 27237586 27238723 CCT
Lele16g0144 16 841010 859880 Lele14g2218 14 27237586 27238723 CCT
Lele14g2218 14 27237586 27238723 Lele15g0129 15 772158 773291 hybridization
Lele14g2218 14 27237586 27238723 Lele16g0138 16 803681 804818 hybridization