LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele14g2194	ATGACTTTTGCTTGCACGAAAATGGCTTCTGCTTCTGTGGCATTAAGCTCCTTCTTCTTCTCCTTCATCATCTTCCTCTTGATGTTTCTATCTTTTCAAAGAACCCGCGTTTTGTCTGTGGATGCTCTGTTTCGCCCGGCAGGAAACTTCCATGTCCATGTCCTATCAGTGAACGAACAAGAAAATGACAACCAGGTTAAGGAAATCTCTGGACAAGATGAGAATGATGGCAAGGGGCTTCTGATAATGGAAAAGTTCAGAGCTTTGCTCGGACTTTACAGTTTCCAAACCAGAAGGCTATCCAATGGCGATTCTGAATTTCTCTCTCCATCACCTTCTCCTTCACCTAACATTGAACTTGAGCCTCCATCGCCATCGCAATCTCCATCTCCTCTTCCGTTACCTCATGCGTTTGTTCATCCCTTTCCTCCACGGCATCGTCCCCGTTTTAATCCATCAGCTCGCAAGTTTCAACATAAAGATAGAGGCAGAACTCAAGCAATACTAGTAGCTGTTCTTGCGTCTGTTGGGGTTGCTACAGTGATTAGTGCTCTTGGGCTTATCTGGCTTTTCAGAAAATGCAGAAAGCATGCAAGGAAACCCAAAAGGACAATGCCACTCTGCAGCAAGAACGGAGGAAGCGGAGGTTCTTGTGAGAACTCGTCAAGTCAGGTGGGTTTGAACTCTGCCATAGATCTATTTTATCTGAATGCTTTAGCCGATGATATAGGGCAGCACAACTTAAGCTTGAAACGGACTTCTGAAACCGTAAATACAAGCTCGAATCATAGCTCCATCCCAAAATGTGCAGTTTATGAGAAAATGGAATTAAATCAAGAAGTGATCGGTTCAGGATATGATAATGCTAGCAGTTCTTCCACGAAGGAAATTCTATCTATTCACGAGGATGCTGAATCAGCGAAAGATGAATCCGAATCTGATGATGGTGGGGATAAAATTATTACCATGGAACGCCATTCATCAGAGACTGACAGTTTTCATTCCTTCGCCGATTCCCACTCGTCAAATGTCAGACTTTCCGATGCTTCTGTGGGCAATGTGACTGAGACACTGTCTCCGTCGCCTCGAGCATCTGAGTCTAATTCTATCAGTTCGTCGGTTCCATTAACGAAGGAAATTCCTCATTCGCCCCAAACTTCAACTTCAAAGATAGAAGAATCTCCTCAATCACCATGCATTGCAAAGCAGGAAGAGCAAAAGATTGAATCTTGTTCACGACGTCCCCAAGCCACCGCGCCTCCGCCGCCGCCTCCAACTCTACAAATACCATTGTTTTCTTTGCATTCTCTTACTTCTTCATCAAGAATTCCCTCCTACTCTCCACTTTCTTCATCATCTCCAAGAAACTCGGATTATAACGCAGCATTGAATCGAAGTGGAGAAAATGAGTCGCCTCGTCCTCCTCAACCTCCTCCTGCAATATCGCCACCTACCATTCCCCTACCACCATGTCCACCACCGCCCTTCACAGGTAATAATAACAATGGGAAAACTCCACCTCCTCCGCCATCTCAGCTTCCCCAGTTTACGCCTCTGGGAAAAGATGGAGCCCCGCTACCAAAACTTAAACCACTCCACTGGGACAAAGTAAGAGCTGCCCCGGATCGGACGATGGTTTGGGACAAGCTTCGAACAAGCTCATTTGAGTTTGATGAGGAAATGATCGAGTCACTTTTTGGCTACAATTTGCAAAATTCAATGAAGAACGACGAGACAAAGAGCAAAAGTCCTTCTCCAAGCAAACACCTACTCGAGCCAAAGAGGCTGCAGAACATTACCATTCTCTCAAAAGCTCTGAATGTGACGGCTGAACATGTATGTGAAACCCTAATACAAGGTAAGGGCCTCGGTTTACAACAGCTAGAGGCACTGGTGAAGATGGTGCCCACCAAGGAAGAAGAGGATAAGCTCTCGAATTATAAAGGAGACATCAATGATTTGGGATCCGCTGAAAAGTTTGTAAGAGCAATGCTGAGTATACCCTTTGCCTTTCAACGTTTTGAAGCCATGCTTTACAGGGAAACCTTTGAGGATGAGATTGTCCACCTCAGGAACTCTTTTTCAATGCTCGAGGATGCGTGCAAGGAACTAAGATCAAGTAGGCTCTTCTTGAAATTACTTGAAGCTGTGCTGAAAACAGGAAACCGTATGAATGTGGGGACAATAAGAGGAGGTGCCCGAGCATTCAAGCTCGATGCCCTTCTCAAGCTAGCTGATGTTAAGGGAACTGATGGGAAAACTACGTTACTCCATTTTGTTGTTCAGGAGATTGTTCGGTCAGAAGGAATCAGAGTTTCGGATAGCATTATGGGGAAAATCAGCCAGAAAAGTAAGAACAGAACAGAAGAAGAGAAGGAAGATGATTACAGAAGAATGGGATTAGAACTTGTTTCTGGTTTGAGTACTGAGCTATACAACGTAAAGAAGACAGCGACAGTCGACTTGGACGTTCTCGCCAGCTCTGTGTCAAACCTAAAAGACGGAATGGCTAAGCTGCAATATCTGGTGCAGGAGTTACATACGGATGAAAAAAGTGAGAACTTTGTGAATTCGATGAAGGCTTTCCTAAATTATGCAGAGAGAAATGTAAGGGAGCTGCAAGGAGATGAAGATAGGGTGCTAGCTCGTGTGAAAGAAATCACAGAGTATTTTCATGGGGATGTGAGCAAAGAAGACGCAAATCCACTTCGGATATTTGTGATTGTAAGAGATTTTATGGGAATGTTGGATAATGTATGTAAAGAACTCAGGAGGTGCCAAGCTCCCCGCACACCAAATCCTCTCGCTCCATTCAGCATAGATGCCCTTGAGGCATTGTATTTCACTATTTTGTCTTCAGAAGGTTTATTTGCCAATATATTATTGCCTGGAAATGGAACTCTGCTTTACATCACCTTAGAGGCTCGGACGTAA	2934	0.4444	MTFACTKMASASVALSSFFFSFIIFLLMFLSFQRTRVLSVDALFRPAGNFHVHVLSVNEQENDNQVKEISGQDENDGKGLLIMEKFRALLGLYSFQTRRLSNGDSEFLSPSPSPSPNIELEPPSPSQSPSPLPLPHAFVHPFPPRHRPRFNPSARKFQHKDRGRTQAILVAVLASVGVATVISALGLIWLFRKCRKHARKPKRTMPLCSKNGGSGGSCENSSSQVGLNSAIDLFYLNALADDIGQHNLSLKRTSETVNTSSNHSSIPKCAVYEKMELNQEVIGSGYDNASSSSTKEILSIHEDAESAKDESESDDGGDKIITMERHSSETDSFHSFADSHSSNVRLSDASVGNVTETLSPSPRASESNSISSSVPLTKEIPHSPQTSTSKIEESPQSPCIAKQEEQKIESCSRRPQATAPPPPPPTLQIPLFSLHSLTSSSRIPSYSPLSSSSPRNSDYNAALNRSGENESPRPPQPPPAISPPTIPLPPCPPPPFTGNNNNGKTPPPPPSQLPQFTPLGKDGAPLPKLKPLHWDKVRAAPDRTMVWDKLRTSSFEFDEEMIESLFGYNLQNSMKNDETKSKSPSPSKHLLEPKRLQNITILSKALNVTAEHVCETLIQGKGLGLQQLEALVKMVPTKEEEDKLSNYKGDINDLGSAEKFVRAMLSIPFAFQRFEAMLYRETFEDEIVHLRNSFSMLEDACKELRSSRLFLKLLEAVLKTGNRMNVGTIRGGARAFKLDALLKLADVKGTDGKTTLLHFVVQEIVRSEGIRVSDSIMGKISQKSKNRTEEEKEDDYRRMGLELVSGLSTELYNVKKTATVDLDVLASSVSNLKDGMAKLQYLVQELHTDEKSENFVNSMKAFLNYAERNVRELQGDEDRVLARVKEITEYFHGDVSKEDANPLRIFVIVRDFMGMLDNVCKELRRCQAPRTPNPLAPFSIDALEALYFTILSSEGLFANILLPGNGTLLYITLEART	977

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele14g2194	977	MobiDBLite	consensus disorder prediction	115	134	-	-
	Lele14g2194	977	MobiDBLite	consensus disorder prediction	431	470	-	-
	Lele14g2194	977	PANTHER	FORMIN-RELATED	18	931	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Lele14g2194	977	MobiDBLite	consensus disorder prediction	103	134	-	-
	Lele14g2194	977	MobiDBLite	consensus disorder prediction	334	403	-	-
	Lele14g2194	977	Gene3D	Formin, FH2 domain	543	931	IPR042201	-
	Lele14g2194	977	MobiDBLite	consensus disorder prediction	327	528	-	-
	Lele14g2194	977	Pfam	Formin Homology 2 Domain	523	916	IPR015425	-
	Lele14g2194	977	MobiDBLite	consensus disorder prediction	471	515	-	-
	Lele14g2194	977	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	490	927	-	-
	Lele14g2194	977	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	519	942	IPR015425	-
	Lele14g2194	977	SMART	it6_source	519	931	IPR015425	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele14g2194	Lele-ChrLele14	27089954	27093750	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele14g2194	22	938	FH2 protein (formin) Gene Family	AT3G05470	48.387	0.0	724

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele14g2194	14	27089954	27093750	Lele13g2267	13	28790602	28795113	CCT
	Lele14g2194	14	27089954	27093750	Lele14g2203	14	27134674	27137374	CCT
	Lele14g2194	14	27089954	27093750	Lele15g0145	15	870825	875340	CCT
	Lele14g2194	14	27089954	27093750	Lele14g2194	14	27089954	27093750	ECH
	Lele14g2194	14	27089954	27093750	Lele15g0152	15	928517	931836	hybridization
	Lele14g2194	14	27089954	27093750	Lele16g0158	16	945378	948800	hybridization