Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g2185 ATGTCGAGTGGGGTATCAGTAGGATTGGAGTGGAGCTCCATAATCATGTGCAGTCATTTTCAGTTGAAGGACCCATCTTCTTCAATAAGACAATCCAGCAGGTTCGACCTCCCACAAACTAGTTCAGGGGTGCGACAGCGATTAGCAAAAATTAAGAATGTGTGGAACATCCCTTGGTGTCAAGATGCAGCATCTTCATATTCGCGAAAAATGAGTAGACTGTCAAGTCGCACTATTTATGTTGGCAATCTTCCTGGCGATGTTCGTTTGAGAGAAGTTGAGGATCTTTTCTACAAGTATGGTCCTATCGTTGACATTGATTTGAAAATTCCTCCAAGGCCACCCGGTTATGCTTTTGTAAAGTTTGAGGATCGTCGCGATGCTGAAGATGCTATTCGCTATCGAGACGGTTATAATTTTGATGGTTTCCGATTGCGAGTTGAATTTGCACATGGTGGGCGGGGATATTCATCATCGGTTGACCGTTACAGTAGTTATAGCAGTGGTGGTGGTAGCCGTGGAGTTTCCAGGCGTTCGGGCTATCGTGTTCTGGTCACTGGATTACCCCCTTCAGCTTCATGGCAAGACTTGAAGGATCACATGCGTAAAGCTGGCGATGTATGTTTCTCTGAAGTCTTTCGGGAGCGTGGTGGCATGACTGGGATCGTGGATTATACCAATTATGATGATATGAAGTATGCTATCAGGAAACTTGACGACTCAGAATTCCGGAATGCATTTTCTCGTGCATACATACGGGTGACGGAATATGATCGTCGGAGTTATTCTAGGAGTCTCAGCCGCGATTCAAGGAGGAGCTATTCTAGAAGCTATAGCCGCAGTCCTTATAGGTCAAGAAGTCAAAGCCGCAGTTGGAGTCGGGATCACAGTTATAGTGGCAGGAGCAGAAGTTTGTCACCAAAGGTAAAACGCTCAAGACGTTCAATATCTCTTTCAAGATCCCGCTCAAGATCCAGGTCTCCAAATTCATCTCCTTCACTTTATAGAAGTTACAGCCCTCGCCGTAGAAACTGGTCACGATCCCCTTCACCTTCGGTGAGGTCTGACCGCAGCAGATCTGTTGACTCTGGATATCGCTATTGA 1104 0.4601 MSSGVSVGLEWSSIIMCSHFQLKDPSSSIRQSSRFDLPQTSSGVRQRLAKIKNVWNIPWCQDAASSYSRKMSRLSSRTIYVGNLPGDVRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVKFEDRRDAEDAIRYRDGYNFDGFRLRVEFAHGGRGYSSSVDRYSSYSSGGGSRGVSRRSGYRVLVTGLPPSASWQDLKDHMRKAGDVCFSEVFRERGGMTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYIRVTEYDRRSYSRSLSRDSRRSYSRSYSRSPYRSRSQSRSWSRDHSYSGRSRSLSPKVKRSRRSISLSRSRSRSRSPNSSPSLYRSYSPRRRNWSRSPSPSVRSDRSRSVDSGYRY 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g2185 367 MobiDBLite consensus disorder prediction 306 320 - -
Lele14g2185 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 146 IPR000504 GO:0003723
Lele14g2185 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 245 IPR000504 GO:0003723
Lele14g2185 367 SMART rrm1_1 182 251 IPR000504 GO:0003723
Lele14g2185 367 SMART rrm1_1 78 148 IPR000504 GO:0003723
Lele14g2185 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 259 IPR000504 GO:0003723
Lele14g2185 367 MobiDBLite consensus disorder prediction 321 358 - -
Lele14g2185 367 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 71 180 - -
Lele14g2185 367 MobiDBLite consensus disorder prediction 276 305 - -
Lele14g2185 367 Gene3D - 182 258 IPR012677 -
Lele14g2185 367 SUPERFAMILY RNA-binding domain, RBD 76 247 IPR035979 GO:0003676
Lele14g2185 367 FunFam serine/arginine-rich splicing factor SR34A-like 181 258 - -
Lele14g2185 367 CDD RRM1_SF2_plant_like 78 148 - -
Lele14g2185 367 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 67 337 - -
Lele14g2185 367 MobiDBLite consensus disorder prediction 262 367 - -
Lele14g2185 367 CDD RRM2_SF2_plant_like 181 256 - -
Lele14g2185 367 Gene3D - 61 181 IPR012677 -
Lele14g2185 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 152 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g2185 Lele-ChrLele14 27033704 27038787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g2185 73 150 Eukaryotic Initiation Factors Gene Family AT3G11400 33.333 7.50e-07 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g2185 14 27033704 27038787 Lele15g0161 15 987041 990085 hybridization
Lele14g2185 14 27033704 27038787 Lele16g0170 16 1011486 1016525 hybridization