Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g2156 ATGGATCATAATTACAGGTTCAACGAGCATGGCCTCCGCCTCCAAGCGCCCTCCGGATCAGATCGCTTCTTCAAGACCCATATCGCCAATCACCCTCTTTATCCTAACTTGCTCTCTGCCTACATAGACTGCCAAAAGGTTGGAGCCACCCCAGAAAGAGTATCCCTTCTTGAAGAAATAGGGAAGCAACAACACCTCGTTAATAATCCTTGTGAGATAGGCGACGACCCTGAACTTGACAAGTTCATGGAATCATACTGCGGAGTTCTACATAGATACGAAGAGGAGCTATCCAGGCCCTTCGACGAAGCCAACTTGTTTCTCTGCACCATGGAATCAAAACTCCGCAATCTTTGCAACGGAACATTCACAATTTCATCGGCTCCTCTTTCTGATGAGGCAAGTGGGAGTAGAGAGAAGGGAATAAGTTGTGGAGACGCAGAAGCAGGAGAAGGTGATGAATGTGATGAGAGGCATTTTGGAGGTGATAAAGAGCTAAGAGAAATGCTGCTTCGCAAGTACAGTGGCTTCCTCAGCGGTTTGAGGAAGGAGATGTTGAAGAAGAAGAAAAAGAATAAGCTTCCAAAGGATGCGAGGATGGCTCTCCTTCAATGGTGGAACTCCCACTACAGATGGCCTTATCCTACGGAAGAGGAGAAATTGAAGTTATCAGAAATGACGGGGCTTGATCAAAAGCAGATCAACAATTGGTTCATCAATCAGAGGAAACGCCATTGGAAACCATCCGAAGATATGCGCATCTCCCTCATGGAAGGTGTGAGTGGTGATGGCATAGGTTGA 801 0.4669 MDHNYRFNEHGLRLQAPSGSDRFFKTHIANHPLYPNLLSAYIDCQKVGATPERVSLLEEIGKQQHLVNNPCEIGDDPELDKFMESYCGVLHRYEEELSRPFDEANLFLCTMESKLRNLCNGTFTISSAPLSDEASGSREKGISCGDAEAGEGDECDERHFGGDKELREMLLRKYSGFLSGLRKEMLKKKKKNKLPKDARMALLQWWNSHYRWPYPTEEEKLKLSEMTGLDQKQINNWFINQRKRHWKPSEDMRISLMEGVSGDGIG 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g2156 266 Pfam KNOX1 domain 25 65 IPR005540 GO:0003677|GO:0005634
Lele14g2156 266 CDD homeodomain 197 249 IPR001356 GO:0003677
Lele14g2156 266 Pfam KNOX2 domain 73 119 IPR005541 GO:0003677|GO:0005634
Lele14g2156 266 ProSiteProfiles ELK domain profile. 165 185 IPR005539 GO:0003677
Lele14g2156 266 SMART ELK_2 165 186 IPR005539 GO:0003677
Lele14g2156 266 SMART KNOX2_2 69 120 IPR005541 GO:0003677|GO:0005634
Lele14g2156 266 Pfam Homeobox KN domain 205 244 IPR008422 GO:0003677|GO:0006355
Lele14g2156 266 SUPERFAMILY Homeodomain-like 187 256 IPR009057 -
Lele14g2156 266 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 28 254 - -
Lele14g2156 266 Pfam ELK domain 165 185 IPR005539 GO:0003677
Lele14g2156 266 Gene3D - 183 256 - -
Lele14g2156 266 ProSiteProfiles 'Homeobox' domain profile. 185 248 IPR001356 GO:0003677
Lele14g2156 266 MobiDBLite consensus disorder prediction 130 154 - -
Lele14g2156 266 ProSitePatterns 'Homeobox' domain signature. 223 246 IPR017970 GO:0000981|GO:0006355
Lele14g2156 266 SMART HOX_1 187 252 IPR001356 GO:0003677
Lele14g2156 266 SMART KNOX1_2 22 66 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g2156 Lele-ChrLele14 26925672 26929164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g2156 23 262 Homeobox Transcription Factor Family AT1G23380 53.036 6.63e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lele14g2156 KNOX2 3.2e-21 No_clan