Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g2153 ATGGATTTCCAGGGATTCTTAAATGACTTGCAAGATTGGGAACTTTCTAGGAAGGACAAAGCTCGAAAAATGAAGTCACAAGTTCCGCACAAGGAAAAAGTTGTGGGTGAGACAGCATCAAGAGGGGAAACTTTATCGGTTGATTTTACGAAAAGTACTTCAGGACAATATGATTTCTCAAGAAATAAAGATTCTTTTGATCATGTCCAGTGTAGTTTCGCCACTGAAGATGTTCCCAATGCTGCTTCGGAAAAAGAACTGGGTAATGAATACTTCAAGCAGAAGAAGTTTAAGGAAGCTATTGACTGCTATTCAAGAAGTATTACCTTCTCACCAACAGCTGTGGCACATGCAAATAAAGCAATGGCCTTTATCAAACTCAGAAGATTTCAACAGGCTGAGGATGACTGTACGGAGGCCTTAAATCTAGATGATCGTTACATAAAAGCATACTCACGTCGAGCAACAGCGAGAAAAGAACTTGGGAAACTTAAAGAAGCAATGGAGGATGCTGAATTTGCTCTGCGCTTGGAACCTGAAAATCAAGAAATCAAGAAACAATATGCTGATATCAAATCTTTGTATGAGAATGAAATTCTTCAGAAAGCATCTGGAGCTCTGAGAAGCTCTCTACAGGGAAATCAAAAGGTGGGAAAGTCAGAGACAAATATTGATGGGGGAACCATCCATCCTGTTGCAAACGGTACTAAAAGATCAGGGGCTGCTGACTTTCAAGATCACACAAAGAGCAATGATAAAAAGGTTCCTGCAAAAGCAGTGCTCAGGTTTGAGGAACTAGGTAGCAAGGAGAAAAGAGCTGAAGGAAAGACTGGAGGACAAGAAATTAGTCATAACAGAATTAACAAGCAAGAAATGAAGGCATCCGTTCAACATCTTGCTTCATGTGTATCTTCACGAGTCATGGCTGAAGCTGCAAAAAATATAACACCGCCAAATTCAGCTTATCAGTTTGAGGTCTCATGGAGAGGGTTTTCAGGTGATCCTGCCGTGCAGGCTCGTCTGTTAAAGGCCATATCTCCTCAAGATTTACCAAAGATATTCAAAAATGCCTTATCTTCTTCGCTACTAATGGACATCATTAAGTGTGTGGCATCCTTTTTCACTGAAGACACAGCTCTGGCTGTCAGTTACATAGAGCACTTGACCAAGGTTTCAAGATTTGACATGCTCATTATGTGTCTTACATCAACAGATAAACATGATATGCGGAAGATCTGGGAGGAAGTGTTCTGCAGAGAGGCAACTCCAATAGAGTATGCAGAGATTCTTGACAACCTCCGATCCAAATACTGCATTGAACATTGA 1326 0.408 MDFQGFLNDLQDWELSRKDKARKMKSQVPHKEKVVGETASRGETLSVDFTKSTSGQYDFSRNKDSFDHVQCSFATEDVPNAASEKELGNEYFKQKKFKEAIDCYSRSITFSPTAVAHANKAMAFIKLRRFQQAEDDCTEALNLDDRYIKAYSRRATARKELGKLKEAMEDAEFALRLEPENQEIKKQYADIKSLYENEILQKASGALRSSLQGNQKVGKSETNIDGGTIHPVANGTKRSGAADFQDHTKSNDKKVPAKAVLRFEELGSKEKRAEGKTGGQEISHNRINKQEMKASVQHLASCVSSRVMAEAAKNITPPNSAYQFEVSWRGFSGDPAVQARLLKAISPQDLPKIFKNALSSSLLMDIIKCVASFFTEDTALAVSYIEHLTKVSRFDMLIMCLTSTDKHDMRKIWEEVFCREATPIEYAEILDNLRSKYCIEH 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g2153 441 SMART tpr_5 148 181 IPR019734 GO:0005515
Lele14g2153 441 SMART tpr_5 115 147 IPR019734 GO:0005515
Lele14g2153 441 SMART tpr_5 81 114 IPR019734 GO:0005515
Lele14g2153 441 Pfam Tetratricopeptide repeat 149 181 IPR019734 GO:0005515
Lele14g2153 441 MobiDBLite consensus disorder prediction 210 253 - -
Lele14g2153 441 Gene3D Tetratricopeptide repeat domain 69 179 IPR011990 GO:0005515
Lele14g2153 441 ProSiteProfiles TPR repeat profile. 148 181 IPR019734 GO:0005515
Lele14g2153 441 PANTHER OS05G0129900 PROTEIN 1 440 - -
Lele14g2153 441 Pfam Potential Monad-binding region of RPAP3 317 406 IPR025986 -
Lele14g2153 441 SUPERFAMILY TPR-like 79 196 IPR011990 GO:0005515
Lele14g2153 441 ProSiteProfiles TPR repeat profile. 81 114 IPR019734 GO:0005515
Lele14g2153 441 Coils Coil 154 174 - -
Lele14g2153 441 Pfam Tetratricopeptide repeat 85 113 IPR001440 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g2153 Lele-ChrLele14 26910274 26914521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g2153 59 185 Calmodulin-binding Proteins AT3G25230 31.944 3.05e-09 57.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g2153 14 26910274 26914521 Lele15g0193 15 1141275 1145389 hybridization
Lele14g2153 14 26910274 26914521 Lele16g0203 16 1153178 1157442 hybridization