Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g2141 ATGGGGCTGTCTTTCACCAAACTGTTTAGTCGACTCTTTGCAAAGAAAGAGATGCGTATTCTCATGGTAGGTCTTGATGCTGCTGGTAAGACCACCATCTTGTACAAGCTCAAGCTGGGAGAGATCGTGACTACCATTCCTACAATCGGATTTAATGTGGAGACTGTGGAATACAAAAACATTAGCTTCACGGTCTGGGATGTAGGAGGCCAAGACAAGATTCGTCCTCTATGGAGACACTACTTCCAAAATACCCAGGGGCTTATCTTTGTGGTTGATAGCAACGATCGTGATCGTGTTGTCGAGGCTAGAGATGAGCTCCACCGGATGTTGAATGAGGATGAGTTGAGAGATGCGGTGCTGCTTGTATTTGCCAACAAGCAAGATCTCCCAAATGCCATGAATGCTGCGGAAATCACGGACAAACTCGGTCTTCATTCTCTTCGTCAACGCCACTGGTATATCCAGAGCACATGTGCCACTTCTGGGGAAGGACTCTACGAGGGACTGGATTGGCTTTCCAACAACATAGCCAACAAGAATAGAGATTTTCATTGGTCTGCCAACGAAATTGCTCCCACGCTTGCTTATAGAAACGCCCTTCAGCTCAACAGTACTGTACTACTGTGGCTGCATATTCACCATTACAAGAAGAGAAATAAAGCATAG 669 0.4604 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKNRDFHWSANEIAPTLAYRNALQLNSTVLLWLHIHHYKKRNKA 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g2141 222 SMART sar_sub_1 1 177 IPR006689 GO:0003924|GO:0005525
Lele14g2141 222 SMART rab_sub_5 18 180 - -
Lele14g2141 222 TIGRFAM small_GTP: small GTP-binding protein domain 16 156 IPR005225 GO:0005525
Lele14g2141 222 ProSiteProfiles small GTPase Arf family profile. 11 177 - -
Lele14g2141 222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 181 IPR027417 -
Lele14g2141 222 Pfam ADP-ribosylation factor family 5 177 IPR006689 GO:0003924|GO:0005525
Lele14g2141 222 Gene3D - 4 187 IPR027417 -
Lele14g2141 222 CDD Arf1_5_like 18 176 IPR045872 GO:0003924
Lele14g2141 222 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Lele14g2141 222 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Lele14g2141 222 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Lele14g2141 222 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924|GO:0005525
Lele14g2141 222 SMART arf_sub_2 1 181 - -
Lele14g2141 222 FunFam ADP-ribosylation factor 1 1 181 - -
Lele14g2141 222 PANTHER ADP RIBOSYLATION FACTOR-RELATED 7 176 IPR024156 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g2141 Lele-ChrLele14 26860087 26863851 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g2141 14 26860087 26863851 Lele14g2141 14 26860087 26863851 ECH
Lele14g2141 14 26860087 26863851 Lele15g0210 15 1205240 1207342 hybridization
Lele14g2141 14 26860087 26863851 Lele16g0217 16 1209090 1217213 hybridization