Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g2121 ATGATGCATTTGGGTTTACATTTCTTTGAGAACAGACGCATGAAATGTGGGTATGAAAAGCTAAAAGGTGAAGATCAAAAGCTGGGGACGGCAAGAAGGCGATGGGTCAAGTATGGAAGATCAAGAGGTCTTCGAATGTGGCGATCAAGGAAGATTTCCGTGAAGCTGTTTTCTTCGGCTCTGAAGCCAACCAGAATAGTAAGAATTTACAATGTTGTTGCCAACCGAATGAACCTGGAAGGCATATGTCCCGCCATTATTCTACCCACTCAGTGGGGTCTCCCTGTTTTTGCCCATCCTTCTCTTACCCTTTCGTATTCTTTAATGCCTATTTCTGATAAGGGCATCTCAAATGCAGATGGAAAGAAGAAGCATTCATGTAGTTGGATTGGAAAGGACATGTCGAGTGAGAGTTATCTCCCATATAAAATCTCATACTTTGGAAGTCATAACTCTGGGATAAAGCTAGCTAGCGGTAACAGTGGCGTTGATTTCCCGAGGGTTTTGTTCCTTGAAGCTCATCGAGTTCACGGGAAAATGTCTTCCTCAAAGCGTAGCCAATCGTCCAGCAATTCAGGAAGATCAAGACACAGTGCGAGGATTATTGCTCAGACCACCGTGGATGCAAAACTTCATGCGGATTTTGAGTATGGTAGCTCCTTTGACTACTCCAGTTCAGTGCGTGTTTCGAGTACCCTTAGTGCTGGAGAGCATCAGTCAAGTTCTGACAGAGTAACAACGGCTTACCTCCAAACCGTACAGAAGGGCCTACTGATTCAGCCTTTTGGCTGCTTGCTAGCCTTAGATGACAAAACATGCAAAGTCATTGCCTACAGTGAGAATGCACCTGAAATGCTTACCACGGTTAGTCAAGCTGTGCCGAATGTTGGTGACCAGCCCGCTCTTGCAATGGGAACTGACATTAGAAGCATTTTTACTGCCCAAAGTGCTTCTGCCTTGCAGAAGGCAATAGGATTTGGAGAGGTTTCACTTCTTAACCCCATCCTTGTGCATTGCAAGACTTCTGGGAAGCCTTTTTATGCAATTGTCCATCGTGTCACTGGTAGTTTGATCATTGACTTTGAGCCTGTCAAGCCTTATGAAGTTCCCACGACTGCGGCAGGTGTCCTCCAATCTTACAAGCTTGCCTCCAAAGCAATTACCCGATTACAAGCATTGCCTAGTGGGAGCATGGAAAGGCTGTGTGATGTAATGGCTCATGAGGTTTTTGAACTCACAGGTTATGACAGGGTGATGGTGTATAAATTTCATGATGATGATCATGGAGAAGTGGTAACTGAGGCCAAAAAGCCAGGCTTAGAGTCATATCTGGGCTTGCATTATCCAGCCACAGATGTTCCACAGGCTACACGCTTTTTATTCATGAAGAACAAGGTTCGTATGATAGTTGATTGTCGGGCAAAATATGTGGGGGTTCTTCAAGATGAAAACCTTCCACATGATTTAACCTTCTGTGGTTCAACCTTGAGGGCTCCTCACAGTTGCCATGTGCAATATATGCAGAACATGAATCTAATTGCCTCCCTGGTTATGGCAGTTGTGGTCAATGACAGAGATGAAGATGGAGATAGCTCTGATTCTGTACAGCCACAGAAGAGAAGGAGACTCTGGGGCTTAGTAGTTTGCCATAATTATACCCCCCGGTTTGTTCCTTTTCCTCTTAGGTATGCTTGTGAGTTCCTGGCTCAAGTATTTGCTATCCATGTTAACAAAGAATTAGAGTTGGAATATCAGATGATTGAAAAGAACATCCTGCGAACCCAGAGTCTCCTGTGTGATATGCTGATGCGTGATGCACCCCTAGGGATTATATCACAGAGCCCAAATATAATGGATCTCGTGAAATGTGATGGAGCTTGCCTCTTGTATAATGACAAGGTATCGAGATTAGGAGTAACACCAAGTGAATCCCAGATACGAGAGATAGCTTTATGGTTGTCAGAATGTCATAAGGATTCCACTGGTTTTAATACAGATAGCTTGTCTGATGCAGGGTTCCCTGGGGCCGCTGCTCTTGGTGATATGGTATGTGGAATGGCAGCTGTGAGAATAGCCTCAAAAGACATGGTTTTCTGGTTTCGGTCACATGCTGCTGCAGAAATGCGATGGGGTGGTGCAAAGCATCAACCTGGTGAAGAGGATGATATTAGAAGGATGCATCCAAGGTCATCATTCAAGGCGTTCCTTGAAGTGGTTAAGTCAAGAAGTTTGCCATGGAAAGACTATGAAATGGATGCTATCCACTCCTTGCAGCTCATACTGAGAAATGCATTCAAAGAGACACAGGTTATGGACACAAGCACAAATGCAATCAATTCAAGACTAAGTGTTTTGAAAATTAAAGGAATGCAAGAACTGGAAGTAGTGACAAGTGAGATGGTTCGATTAATTGAAACGGCAACTGTACCAATTTTGGCAGTTGATGTTGATGGACTGGTCAATGGGTGGAATTCAAAAATTTCTGAGTTGACATGTCTTCCAGTCGATGAAGCTATTGGAAAGCATTTGCTCACACTTGTAGAAGACTCTTCAGCTGATAGAGTCAAGAAGATGCTTTCCATGGCACTGCAAGGTGAAGAAGAGCAGAATGTTCAATTTGAGATCAAGACACATGGGTCTAAGGCTGACTCTACTCCTATCAGCTTAGAAGTTAATGCTTGTGCAAGTAGGGATCTTCAAGATAATGTTGTTGGGGTTTGTTTTGTGGCTCAAGATATAACTGCTCAGAAGACAGTTATGGACAAATTCACTCGAATTGAAGGGGATTACAAGGCAATTGTCCAGAACCCAAATCCTTTGATTCCCCCAATATTTGGTACAGATGAATTTGGCTGGTGTTGTGAATGGAATCTGGCTATGACAAAGTTAACTGGATGGGAGCGAGAGGAGGTGATGAATAAGATGCTTTTAGGGGAAGTGTTTGGTACCCAGATGGTTTGTTGTCGTCTCAAGAATCAAGAAGCTTTTGTTAATTTCGGTATTGTACTTAATAATGCCATGACTGGTTTGGAAACGGAGAAGGTTGCTTTTGGTTTCTTTGCTCGGAATGGCAAGTATGTAGAATGCCTGCTTTCTGTGAGCATGAAATTGGATTCAGAAGGAGCAATTACTGGGGTCTTCTGCTTCTTGCAGCTAGCAAGCCCAGAGCTGCAACAAGCATTACATATTCAGCGCCTTTCTGAAAAAACAGCCATGAAGAGACTAAAAGCTTTAACTTATATGAAAAGGCAGATTTGGAATCCTTTATGCGGGATTGCGTTCTCCCGTAAAATGTTGGATGATACTGAACTAGGAACTGACCAAAAGCAGCTTCTGCACATTAGTGCTCAGTGCCAGCGCCAGCTGAGAAAAATCCTTGATGACTCAGATCTTGACAGCATCGTTGATGGGTACTTGGATCTGGAGATGGCTGAATTCACTTTGCATGATGTATTGGTTGCCTCCTTTAGTCAAGTGATGACGAAGAGCAATGCAAAAGGCATCGGAATAGTGAATAATGTTGAAGATCGTATCAGGGCAGAAATCTTATATGGTGATAGTCTTAGACTTCAGCAGATCCTTGCTGACTTCTTATCCATTTCCATCAGTTTTACTCCGTCTGGGGGTCAGGTTCTTATGGCGGCCTCTCTAACCAAAGATCACTTAGGAAAATCTGTCCAGCTTGCCAAGTTGGAGCTCAGCATAACACATACTGGTAGTGGGGTGACAGAAGCATTGCTGAACCAGATGTTTGGAAGTGAAGGACATGAATCGGAGGAGGGTGTTAGCCTTCTCATCAGCAGAAAGTTGCTAAAGCTCATGAACGGAGATGTGCGTTATCTTAGGGAAGAAGGCAAATCATCTTTCATATTATCTGTTGAACTTGCTGTTGCCCACAAATGA 3903 0.4358 MMHLGLHFFENRRMKCGYEKLKGEDQKLGTARRRWVKYGRSRGLRMWRSRKISVKLFSSALKPTRIVRIYNVVANRMNLEGICPAIILPTQWGLPVFAHPSLTLSYSLMPISDKGISNADGKKKHSCSWIGKDMSSESYLPYKISYFGSHNSGIKLASGNSGVDFPRVLFLEAHRVHGKMSSSKRSQSSSNSGRSRHSARIIAQTTVDAKLHADFEYGSSFDYSSSVRVSSTLSAGEHQSSSDRVTTAYLQTVQKGLLIQPFGCLLALDDKTCKVIAYSENAPEMLTTVSQAVPNVGDQPALAMGTDIRSIFTAQSASALQKAIGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPTTAAGVLQSYKLASKAITRLQALPSGSMERLCDVMAHEVFELTGYDRVMVYKFHDDDHGEVVTEAKKPGLESYLGLHYPATDVPQATRFLFMKNKVRMIVDCRAKYVGVLQDENLPHDLTFCGSTLRAPHSCHVQYMQNMNLIASLVMAVVVNDRDEDGDSSDSVQPQKRRRLWGLVVCHNYTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQMIEKNILRTQSLLCDMLMRDAPLGIISQSPNIMDLVKCDGACLLYNDKVSRLGVTPSESQIREIALWLSECHKDSTGFNTDSLSDAGFPGAAALGDMVCGMAAVRIASKDMVFWFRSHAAAEMRWGGAKHQPGEEDDIRRMHPRSSFKAFLEVVKSRSLPWKDYEMDAIHSLQLILRNAFKETQVMDTSTNAINSRLSVLKIKGMQELEVVTSEMVRLIETATVPILAVDVDGLVNGWNSKISELTCLPVDEAIGKHLLTLVEDSSADRVKKMLSMALQGEEEQNVQFEIKTHGSKADSTPISLEVNACASRDLQDNVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNLAMTKLTGWEREEVMNKMLLGEVFGTQMVCCRLKNQEAFVNFGIVLNNAMTGLETEKVAFGFFARNGKYVECLLSVSMKLDSEGAITGVFCFLQLASPELQQALHIQRLSEKTAMKRLKALTYMKRQIWNPLCGIAFSRKMLDDTELGTDQKQLLHISAQCQRQLRKILDDSDLDSIVDGYLDLEMAEFTLHDVLVASFSQVMTKSNAKGIGIVNNVEDRIRAEILYGDSLRLQQILADFLSISISFTPSGGQVLMAASLTKDHLGKSVQLAKLELSITHTGSGVTEALLNQMFGSEGHESEEGVSLLISRKLLKLMNGDVRYLREEGKSSFILSVELAVAHK 1300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g2121 1300 ProSiteProfiles PAS repeat profile. 796 866 IPR000014 -
Lele14g2121 1300 PRINTS Phytochrome signature 891 908 IPR001294 GO:0006355|GO:0009584
Lele14g2121 1300 PRINTS Phytochrome signature 728 746 IPR001294 GO:0006355|GO:0009584
Lele14g2121 1300 PRINTS Phytochrome signature 695 714 IPR001294 GO:0006355|GO:0009584
Lele14g2121 1300 PRINTS Phytochrome signature 610 630 IPR001294 GO:0006355|GO:0009584
Lele14g2121 1300 PRINTS Phytochrome signature 412 431 IPR001294 GO:0006355|GO:0009584
Lele14g2121 1300 PRINTS Phytochrome signature 799 815 IPR001294 GO:0006355|GO:0009584
Lele14g2121 1300 PRINTS Phytochrome signature 312 334 IPR001294 GO:0006355|GO:0009584
Lele14g2121 1300 PRINTS Phytochrome signature 497 518 IPR001294 GO:0006355|GO:0009584
Lele14g2121 1300 PRINTS Phytochrome signature 911 931 IPR001294 GO:0006355|GO:0009584
Lele14g2121 1300 PRINTS Phytochrome signature 818 833 IPR001294 GO:0006355|GO:0009584
Lele14g2121 1300 SMART pas_2 928 997 IPR000014 -
Lele14g2121 1300 SMART pas_2 798 864 IPR000014 -
Lele14g2121 1300 Pfam PAS fold 248 364 IPR013654 GO:0006355
Lele14g2121 1300 Coils Coil 577 597 - -
Lele14g2121 1300 MobiDBLite consensus disorder prediction 179 199 - -
Lele14g2121 1300 SUPERFAMILY GAF domain-like 377 577 - -
Lele14g2121 1300 Gene3D - 585 758 IPR043150 -
Lele14g2121 1300 FunFam Phytochrome 585 717 - -
Lele14g2121 1300 ProSiteProfiles PAS repeat profile. 929 981 IPR000014 -
Lele14g2121 1300 SMART HKATPase_4 1185 1297 IPR003594 -
Lele14g2121 1300 TIGRFAM sensory_box: PAS domain S-box protein 803 919 IPR000014 -
Lele14g2121 1300 ProSiteProfiles PAC domain profile. 869 925 IPR000700 -
Lele14g2121 1300 CDD PAS 807 913 IPR000014 -
Lele14g2121 1300 SUPERFAMILY GAF domain-like 588 768 - -
Lele14g2121 1300 ProSiteProfiles Histidine kinase domain profile. 1080 1299 IPR005467 -
Lele14g2121 1300 Gene3D PAS domain 258 500 - -
Lele14g2121 1300 ProSitePatterns Phytochrome chromophore attachment site signature. 497 506 IPR013516 -
Lele14g2121 1300 Gene3D PAS domain 789 927 - -
Lele14g2121 1300 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1134 1289 IPR036890 -
Lele14g2121 1300 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 397 570 IPR016132 -
Lele14g2121 1300 Gene3D - 1136 1299 IPR036890 -
Lele14g2121 1300 Pfam Phytochrome region 593 768 IPR013515 GO:0006355|GO:0009584
Lele14g2121 1300 PANTHER TWO-COMPONENT HISTIDINE KINASE 1067 1288 - -
Lele14g2121 1300 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1185 1295 IPR003594 -
Lele14g2121 1300 MobiDBLite consensus disorder prediction 182 199 - -
Lele14g2121 1300 SMART gaf_1 397 590 IPR003018 GO:0005515
Lele14g2121 1300 Pfam PAS fold 929 1051 IPR013767 GO:0006355
Lele14g2121 1300 Pfam PAS fold 799 913 IPR013767 GO:0006355
Lele14g2121 1300 SUPERFAMILY PYP-like sensor domain (PAS domain) 258 365 IPR035965 -
Lele14g2121 1300 Pfam GAF domain 398 580 IPR003018 GO:0005515
Lele14g2121 1300 CDD PAS 940 1051 IPR000014 -
Lele14g2121 1300 Gene3D - 378 741 IPR029016 -
Lele14g2121 1300 FunFam Phytochrome 792 923 - -
Lele14g2121 1300 Gene3D PAS domain 942 1054 - -
Lele14g2121 1300 SUPERFAMILY PYP-like sensor domain (PAS domain) 802 909 IPR035965 -
Lele14g2121 1300 SUPERFAMILY PYP-like sensor domain (PAS domain) 943 1049 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g2121 Lele-ChrLele14 26747561 26756630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g2121 180 1300 Histidine Kinase Gene Family AT1G09570 75.156 0.0 1757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0263 05 1481123 1485659 Lele14g2121 14 26747561 26756630 CCT
Lele14g2121 14 26747561 26756630 Lele15g0229 15 1294532 1295063 hybridization
Lele14g2121 14 26747561 26756630 Lele16g0233 16 1301194 1305467 hybridization