Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g2101 ATGGGCAAAACCTCTAGTTCGTCGTCGTCGTCGATTAGCAGTAACAGCAACGACCTCGCTTTCTCAACCGCATCTTCTTCTCTCGAACACCTTCCTACAGATCTCAGGCTTGGACTCAGCATTTCACCCATTCCACATCTTCACTCTTGTATTTCAAGGGGGAAACCTTCACACAAGATGACTCTGGGAAGAAGTAGTTCACGTGCAGCTGAAGAAAATGATCGCAGCCTCTTCGTAAAGGTGTACATGGAAGGGATTCCGATAGGCAGGAAACTGGATTTATTAGCTCAAGATGGCTACCACGAGTTAATAAAGACGCTTCAGCACATGTTTGACACTACCATTATCTTGGGGTCTGAAATGGAGGAAGTGATCCAACCACAGAGATGGCACGTGCTGACCTATGAAGACGAGGAAGGGGACTTGATCATGGTTGGAGATATCCCTTGGGAGATGTTCTTATCCACTGTCAAGAGATTGAAGATCACCAGGGTAGAAGCATTCGGGTGTTAA 513 0.4659 MGKTSSSSSSSISSNSNDLAFSTASSSLEHLPTDLRLGLSISPIPHLHSCISRGKPSHKMTLGRSSSRAAEENDRSLFVKVYMEGIPIGRKLDLLAQDGYHELIKTLQHMFDTTIILGSEMEEVIQPQRWHVLTYEDEEGDLIMVGDIPWEMFLSTVKRLKITRVEAFGC 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g2101 170 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 67 165 IPR003311 GO:0005634|GO:0006355
Lele14g2101 170 SUPERFAMILY CAD & PB1 domains 66 163 - -
Lele14g2101 170 Pfam AUX/IAA family 67 164 IPR033389 -
Lele14g2101 170 Gene3D - 70 169 - -
Lele14g2101 170 ProSiteProfiles PB1 domain profile. 76 167 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g2101 Lele-ChrLele14 26639379 26640302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g2101 52 162 B3 DNA Binding Superfamily AT4G23980 35.135 2.97e-15 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele14g2101 AUX_IAA 4.2e-30 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0108 06 673505 674928 Lele14g2101 14 26639379 26640302 CCT
Lele07g0311 07 1713794 1716951 Lele14g2101 14 26639379 26640302 CCT
Lele08g0110 08 660820 664631 Lele14g2101 14 26639379 26640302 CCT
Lele05g0292 05 1646232 1647131 Lele14g2101 14 26639379 26640302 CCT
Lele14g2101 14 26639379 26640302 Lele16g0256 16 1420123 1421014 hybridization