LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele14g2091	ATGAGTTGTTTCAGCTGTTGCGAAGAGGATGAACTCCACAAAGCTGCTGAGAGTGGAGGACCATACGTGGTAAAAAACTCAACAGGAAACGATGGAAATTATCATGCTTCTGAAACTGCAAAGCAGGGTGCTCAGACTGTTAAAGTCCAGCCCATTGAAGTTCCTGCCATATCAGCGGATGAATTAGAAGAAATTACAGATAATTTTGGGACAGATTCTCTGATTGGGGAGGGGTCCTATGGAAGAGTATATTATGGCGTTCTTAAAAATGGTCTGGCTGCAGCAATCAAGAAGTTAGATGCTAGTAAACAACCTGATGATGAGTTTTTAGCCCAGGTTTCCATGGTATCAAGGCTGAAGCATGAAAATTTTGTTCAATTACTTGGTTATTGTGTTGATGGAAGTTCCCGTGTTCTTGCTTATGAGTTTGCGTCTAACGGATCTCTTCACGACATTTTACATGGCAGAAAAGGTGTTAAAGGAGCCCAACCTGGTCCTGTCCTGTCATGGGCACAGAGAGTAAAGATTGCTGTAGGAGCTGCAAAAGGGCTTGAGTACTTGCATGAGAAGGCTGATCCTCACATTATCCACCGAGACATCAAATCAAGCAATGTACTGATTTTTGATGATGATGTTGCTAAGATTGCAGATTTTGATTTGTCAAATCAGGCTCCTGACATGGCTGCACGTCTTCATTCCACTCGTGTCCTTGGAACCTTTGGTTATCATGCACCAGAATATGCAATGACTGGACAACTGAATGCTAAAAGTGATGTATACAGCTTTGGCGTTGTCCTTCTGGAACTTTTGACTGGAAGGAAGCCTGTGGATCATACGCTACCTCGTGGACAGCAGAGCCTGGTTACTTGGGCTACACCAAAACTCAGTGAAGATAAAGTCAGGCAGTGTGTTGATACAAGACTAGGAGGAGATTACCCACCCAAAGCTGTTGCTAAGATGGCTGCTGTTGCTGCGCTATGCGTGCAATATGAAGCTGACTTCAGACCAAACATGAGCATTGTAGTCAAAGCTCTTCAACCTTTGTTGAATGCACGACCTGGACCTGCTGGTGAAACTCCAAATTGA	1086	0.4392	MSCFSCCEEDELHKAAESGGPYVVKNSTGNDGNYHASETAKQGAQTVKVQPIEVPAISADELEEITDNFGTDSLIGEGSYGRVYYGVLKNGLAAAIKKLDASKQPDDEFLAQVSMVSRLKHENFVQLLGYCVDGSSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDTRLGGDYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLNARPGPAGETPN	361

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele14g2091	361	Gene3D	Phosphorylase Kinase; domain 1	30	143	-	-
	Lele14g2091	361	Gene3D	Transferase(Phosphotransferase) domain 1	144	353	-	-
	Lele14g2091	361	Pfam	Protein tyrosine and serine/threonine kinase	73	345	IPR001245	GO:0004672\|GO:0006468
	Lele14g2091	361	FunFam	pto-interacting protein 1	145	356	-	-
	Lele14g2091	361	ProSiteProfiles	Protein kinase domain profile.	69	349	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele14g2091	361	PIRSF	ILK	8	352	-	-
	Lele14g2091	361	CDD	STKc_IRAK	75	348	-	-
	Lele14g2091	361	PANTHER	PTO-INTERACTING PROTEIN 1-LIKE	4	353	-	-
	Lele14g2091	361	SUPERFAMILY	Protein kinase-like (PK-like)	48	345	IPR011009	-
	Lele14g2091	361	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	195	207	IPR008271	GO:0004672\|GO:0006468
	Lele14g2091	361	FunFam	PTI1-like tyrosine-protein kinase 3	33	143	-	-
	Lele14g2091	361	ProSitePatterns	Protein kinases ATP-binding region signature.	75	98	IPR017441	GO:0005524
	Lele14g2091	361	SMART	serkin_6	69	349	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele14g2091	Lele-ChrLele14	26577546	26580159	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele14g2091	50	346	Receptor kinase-like Gene Family	AT4G02010	50.166	1.19e-91	288

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIII	Lele14g2091		PK_Tyr_Ser-Thr	3.6e-46	CL0016