Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g2032 ATGGGAAGAGCACCGTGCTGTGAGAAAGTAGGCCTGAAAAGGGGAAGATGGAGTGCTCAAGAGGATGAAATCTTGACTAGGTACATTCAGGCCAACGGGGAAGGTTCTTGGAGGGCTTTGCCCAAGAATGCTGGGCTCCTGAGGTGTGGCAAGAGCTGCAGGTTAAGATGGATAAACTACTTGAGGTCTGACCTTAAGAGAGGCAACATTTCTGCTCACGAGGAACAGCTCATTATTAAACTCCATTCTTCGTTGGGCAACAGGTGGTCCCAGATAGCGAGCCACTTGCCAGGAAGAACTGACAACGAAATTAAAAACTACTGGAATTCTCACTTGAGCAAGAAGGTCTGCGCCTTCAGGAGGCCGGCTAGTAGGGACCAGGCCAAGCAAGCAGTGACCACGGATCCGATCACACCCAATAATGCAAACATTAATATTACTGCAACCAAGCGCAAGGGTGGCAGAACCAGCCGTTGGGCCATGAAGAAGAACAGAAGCAACAACACCCGCCAAGAGTCTACGGCGGCAGAGAAAACGAATAACAACAGTACCGTAGCAGCAGTTCCGGTGCCACCCACGCCGGCACTAGAGAAGGAAGGCTTGTCCATTACAAGTGACGATGGCATAGACTTTGAGGATTTCATGGTTCTGGAAGGTGACAACATTAATACAGAAGACAAAGTAGAGGGATCAGAAGAAGCAGGTGAGGCAAGTAACAACGATGGAGAATGCTGCGAAGATGGTTCGTTGAGGTCAGGTGGAGACAGAGAAACAGAGACGACACAGGAGGGTCAAGCGCAAGGCAGTATTGGTGGTGGTGGTGGTGGTGGTGGTGGGGAGCTATGTCTGAGTGACATGGTGGACCCTTGGTTGCTGGAAAACGAAGGAGGTGGGGTTTCCAGTTTAACTGAAGAGAGAGAAAGAATCTATGAGGTGTCATGTTTTGATCGGCCAGAGTGTACTAATAATAATAATGCTCAAGCCTCCATGCCTTCCCTATCTGAATGCGATAATTACTGGGATAATTGGGAGATTGGAATGGACGACCAGCTGATGAAAAATCATAACGAGTCGCAGACATGGTGGGAGGACAAACAAAGCCTCTTGTCTTGGCTCTGGGAAGACGATGATGATTGTCAGATTACTCAACAGAATGATCCTGAGAAACGAAACCCGAACCTGCCTTTGATTCTTTAA 1197 0.4862 MGRAPCCEKVGLKRGRWSAQEDEILTRYIQANGEGSWRALPKNAGLLRCGKSCRLRWINYLRSDLKRGNISAHEEQLIIKLHSSLGNRWSQIASHLPGRTDNEIKNYWNSHLSKKVCAFRRPASRDQAKQAVTTDPITPNNANINITATKRKGGRTSRWAMKKNRSNNTRQESTAAEKTNNNSTVAAVPVPPTPALEKEGLSITSDDGIDFEDFMVLEGDNINTEDKVEGSEEAGEASNNDGECCEDGSLRSGGDRETETTQEGQAQGSIGGGGGGGGGELCLSDMVDPWLLENEGGGVSSLTEERERIYEVSCFDRPECTNNNNAQASMPSLSECDNYWDNWEIGMDDQLMKNHNESQTWWEDKQSLLSWLWEDDDDCQITQQNDPEKRNPNLPLIL 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g2032 398 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele14g2032 398 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lele14g2032 398 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lele14g2032 398 MobiDBLite consensus disorder prediction 160 188 - -
Lele14g2032 398 FunFam Myb transcription factor 11 67 - -
Lele14g2032 398 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 205 - -
Lele14g2032 398 Gene3D - 14 66 - -
Lele14g2032 398 CDD SANT 71 112 IPR001005 -
Lele14g2032 398 Gene3D - 71 116 - -
Lele14g2032 398 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lele14g2032 398 MobiDBLite consensus disorder prediction 150 200 - -
Lele14g2032 398 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele14g2032 398 MobiDBLite consensus disorder prediction 226 279 - -
Lele14g2032 398 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lele14g2032 398 CDD SANT 16 61 IPR001005 -
Lele14g2032 398 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele14g2032 398 SMART sant 13 63 IPR001005 -
Lele14g2032 398 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g2032 Lele-ChrLele14 26275322 26277253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g2032 1 162 MYB Transcription Factor Family AT2G47460 69.753 5.92e-73 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele14g2032 Myb_DNA-binding 1.9e-11 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g2032 14 26275322 26277253 Lele15g0306 15 1725505 1727509 hybridization
Lele14g2032 14 26275322 26277253 Lele16g0316 16 1772729 1774824 hybridization