Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g2026 ATGGATGTTAAAACAGAGAAAATCTGCCGGGATTGCCACACACGGACTACACCGCTATGGAGGGCGGGTCCAGATGGGCCAAGGTCTCTTTGTAATGCCTGCGGACTACGCTTCAGAAAGAGAATGGCTCTCGTAGTATCACAAAAGCGAAGGAAGAGGACTCCCACTGGTAGAGTAATGAAGCGGCAGATGAAGTTAAAAGAGGAAGAAGAAGCGGCCATATCACTCATGGCTCTTTCTTGTGGCTCTGTCTACCTAACAGAACGACACTAG 273 0.4908 MDVKTEKICRDCHTRTTPLWRAGPDGPRSLCNACGLRFRKRMALVVSQKRRKRTPTGRVMKRQMKLKEEEEAAISLMALSCGSVYLTERH 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g2026 90 CDD ZnF_GATA 8 41 IPR000679 GO:0006355|GO:0043565
Lele14g2026 90 Gene3D - 3 73 IPR013088 GO:0006355|GO:0008270
Lele14g2026 90 PANTHER OS01G0976800 PROTEIN 4 48 - -
Lele14g2026 90 ProSiteProfiles GATA-type zinc finger domain profile. 3 39 IPR000679 GO:0006355|GO:0043565
Lele14g2026 90 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 51 - -
Lele14g2026 90 ProSitePatterns GATA-type zinc finger domain. 9 34 IPR000679 GO:0006355|GO:0043565
Lele14g2026 90 Pfam GATA zinc finger 9 41 IPR000679 GO:0006355|GO:0043565
Lele14g2026 90 SMART GATA_3 3 55 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g2026 Lele-ChrLele14 26237328 26237687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g2026 6 85 C2C2-Gata Transcription Factor Family AT5G49300 44.231 2.03e-21 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele14g2026 GATA 4e-18 CL0167