Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1983 ATGCTATGTTGGAACGAGTGTTTAGAGATTCTGCAGAATTCACCCTGTTGTTTTCTTCCGTCAATGCATTACAAAATGCTCTGTTTTCTGGTGGGCTTCCCAATCAGATTGGACGGCGTATTTTTTGGAGCATTTGTCGCATTTCCATTTCTTCTCGCCGTGTTTGCGGCTGAAGTGCTTTTTGATGCCGGTGAGATTGTGACCTCTCCGGTGCAACTGCAGGGAGATTTCGCTTCTTCTTGGTTTGATGATCACTGGAGGCATTGTTGTGGGAAGGTGTTGAGCTTGAGCCATGCAAGTGCTTGTCTTGTTGCTGTTGCTTCATCACCTGAAATGTTTGACATTTTATCACGAAGACAGGCACTAGAGATGAGTGATAACTCAGAAAGAGAAGGCTTCGATAAGTACAACTTCAACAGCACAGGTTCTCATCATCATCAAGATGGGGGAATTATCAAGGAGCAAGATCGTTTGCTTCCAATAGCTAATGTGGGGAGGATTATGAAGCAAATTCTGCCTCCTAACGCAAAAATCTCCAAAGAAGCGAAAGAATCCATGCAGGAATGTGTTTCTGAGTTCATAAGCTTCGTCACTGGGGAGGCTTCTGATAAGTGTCACAAGGAGAAGCGCAAGACAGTGAATGGCGACGATATTTGCTGGGCCCTCGCCACTCTAGGGTTTGACGACTACGCCGAGCCACTCAAGAGGTATTTGCTTAAGTTTAGGGAATCAGAAGGCGAGAGATCTAACCAAAATAAGGATAACAATATTCATACCGATGAAATTCATATTTCTGATCAAGCTTATGATTATGGAGCTGAGCCTCCAGCTAGGAGAGCCCCCCCTACGAGTGCTTACTCTGGTTCTGGTACCTCATTGATGAGGTTCAATGGCTCCTCTCATCACTCACACCAGTTTTCAAACTTCTAG 930 0.4495 MLCWNECLEILQNSPCCFLPSMHYKMLCFLVGFPIRLDGVFFGAFVAFPFLLAVFAAEVLFDAGEIVTSPVQLQGDFASSWFDDHWRHCCGKVLSLSHASACLVAVASSPEMFDILSRRQALEMSDNSEREGFDKYNFNSTGSHHHQDGGIIKEQDRLLPIANVGRIMKQILPPNAKISKEAKESMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLLKFRESEGERSNQNKDNNIHTDEIHISDQAYDYGAEPPARRAPPTSAYSGSGTSLMRFNGSSHHSHQFSNF 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1983 309 Gene3D Histone, subunit A 148 272 IPR009072 GO:0046982
Lele14g1983 309 FunFam Nuclear transcription factor Y subunit B-3 147 270 - -
Lele14g1983 309 ProSitePatterns NF-YB/HAP3 subunit signature. 189 205 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lele14g1983 309 PRINTS CCAAT-binding transcription factor subunit A signature 205 223 - -
Lele14g1983 309 PRINTS CCAAT-binding transcription factor subunit A signature 224 242 - -
Lele14g1983 309 PRINTS CCAAT-binding transcription factor subunit A signature 186 204 - -
Lele14g1983 309 SUPERFAMILY Histone-fold 155 259 IPR009072 GO:0046982
Lele14g1983 309 MobiDBLite consensus disorder prediction 272 292 - -
Lele14g1983 309 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 129 263 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lele14g1983 309 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 158 222 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1983 Lele-ChrLele14 25986876 25992603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1983 133 250 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.669 3.29e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele14g1983 CBFD_NFYB_HMF 8.7e-27 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g1983 14 25986876 25992603 Lele05g1557 05 9972488 9974432 CCT
Lele14g1983 14 25986876 25992603 Lele06g1403 06 9030073 9032016 CCT
Lele14g1983 14 25986876 25992603 Lele07g1613 07 9975712 9979010 CCT
Lele14g1983 14 25986876 25992603 Lele08g1402 08 8976671 8978607 CCT
Lele14g1983 14 25986876 25992603 Lele15g0354 15 2023155 2023628 hybridization
Lele14g1983 14 25986876 25992603 Lele16g0372 16 2038954 2039517 hybridization