Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1946 ATGGTTCCCTGGGGTGGAGTCAGTTGCTGTTTGAGTGCGGCTGCTCTTTACCTTCTCGGGAGAAGTAGTGGCAGAGATGCTGAAATTCTTAAATCCGTTACCCGTGTCAATCAGTTAAAAGAATTAGCGCAACTGCTAGATGCTGAAATATTACCTCTTGTTGTTGCAATTTCCGGAAGAGTTGGCTCTGAAACCCCAGTTAACTGTGAATTCAGTGGCTTAAGGGGTGTAATAGTTGAAGAAACGGCAGAGCAACATTTTCTTAAACACAATGATGCTGGTTCGTGGATACAAGATTCTGCTTTAATGCTATCCATGAGCAAAGAAGTTCCTTGGTATCTGGATGATGGAACTAATCATGTTCACGTGGTTGGAGCTCGGGGTGCTACTGGTTTTGTATTACCTGTTGGAAGCGAAGCATTTGAAGAGTCAGGCCGATCACTTGTACGCGGAACATTGGATTATCTCCAAGGTCTCAAGATGCTTGGAGTCAAGAGAATTGAACGAGTACTTCCAATTGGCACATCCTTGACAGTTGTTGGTGAGGCTGCTAAAGATGACATTGGAAGCATCCGAATTCAGCGACCCCACAAAGGGCCATTTTATGTCTCTCCAAAAACAATTGATCAGCTCATTGCCAATCTTGGGAAATGGGCAAGGTGGTATAAGTATGCATCTGTGGGCTTGACCGTTTTTGGTGCTTATTTAATAGCCAAGCATGCTATTCAGTGCATCTTGGAAAGACGACGCCGTTGTGAACTGCAAAAGAGGGTTCTTGCTGCAGCTGCTAAGAGGTCAGGACAAGATAATGAAGGTGAGAAGGCTGATAGTTCACCAGATGGTGCAAAAAGAGATCGCATAATGCCAGATTTATGTGTCATATGCCTTGAGCATGAGTATAATGCTGTATTTGTTCCGTGTGGGCACATGTGCTGCTGTACAACTTGTTCTTCCCACTTAACCAACTGTCCTCTATGCCGGCGGCGGATAGAGCAGGTAGTGAAGACGTCTTTACCTCTTTGGGGAAGTTACCCTGTTACAGTCATCCAGATGACCGCAATGGATCCTCTGCAGTCTGCACACGGTTCCCTCACAATGGGGGATCCAAGGTGA 1113 0.4564 MVPWGGVSCCLSAAALYLLGRSSGRDAEILKSVTRVNQLKELAQLLDAEILPLVVAISGRVGSETPVNCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTNHVHVVGARGATGFVLPVGSEAFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPIGTSLTVVGEAAKDDIGSIRIQRPHKGPFYVSPKTIDQLIANLGKWARWYKYASVGLTVFGAYLIAKHAIQCILERRRRCELQKRVLAAAAKRSGQDNEGEKADSSPDGAKRDRIMPDLCVICLEHEYNAVFVPCGHMCCCTTCSSHLTNCPLCRRRIEQVVKTSLPLWGSYPVTVIQMTAMDPLQSAHGSLTMGDPR 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1946 370 ProSiteProfiles Zinc finger RING-type profile. 292 327 IPR001841 -
Lele14g1946 370 FunFam Baculoviral IAP repeat containing 7 301 336 - -
Lele14g1946 370 Pfam E3 Ubiquitin ligase 85 233 IPR022170 GO:0004842|GO:0006996|GO:0016567
Lele14g1946 370 PANTHER - 1 306 IPR044231 GO:0004842|GO:0016567
Lele14g1946 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 338 IPR013083 -
Lele14g1946 370 CDD RING-HC_LRSAM1 291 330 - -
Lele14g1946 370 SUPERFAMILY RING/U-box 285 333 - -
Lele14g1946 370 Pfam Zinc finger, C3HC4 type (RING finger) 290 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1946 Lele-ChrLele14 25763484 25766811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1946 1 272 C3H Transcription Factor Family AT1G63900 78.102 2.45e-157 441
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g1946 14 25763484 25766811 Lele15g0391 15 2257638 2263011 hybridization
Lele14g1946 14 25763484 25766811 Lele16g0414 16 2239608 2245571 hybridization