Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1921 ATGTTTGACTTGCCGGATGAGTTGCTTTGCACTAGTTCCGTAAGCTTTCGATTGTTAGTTGAGAAATGTGAACTGAACTGTGATATGGGGACCGGAACGAATGCTGTGTTAGTTGAGAATGAGAACAATAGAAGGGTTTTAAATTGTTGGGATGGTAAGAAATCTATTAATGAAGATAACGCTGTGGTGGTGGTGAGGAAAAGTAGAGAGTCTGATGGGTATAAGAAGATACAGGTTAAGGCAGAAGAGGTAGAGGCCCATGAATGCATTAGTAGTGGTTATGAGGAGAAGAAGATTAAGGAAGGCAATGGCAGACGGAAGTTGAAACGAGCGTGGGAGGCCCCCCAAAACAGAGATGACAATGCAGTTGACTATAGACCTAGGAATGCCAGAGATTATAATGATGCAGTGTATGTTAGTCTAGATGGAACGACCCACTGGTCAATTACCTTGGCCTACAATAGGCTGAAGAAGCATTATGAAGATGGTGACGGTGAAGGGGCAAAGGATGAAGGTAAAGTTAATGGAGCTAATAAAAAAGCAAAAAAAGAAAGACAAGGGTCCATTTCAAGCCTGGGTAAGTCAATGAAGGGGAAGAAGAGGAAACAGGCATTTATTGAGGAGGATTATTCTGATGTAGCATTGCCTAGCAGAATGTCGATTCAGATTAAGGATCATAAGCGACAGAAATCACGAAACAATAAGCAACGTGTTCTGTTGGTTTGCAATGTTGAGAAAGAGATAGATTCAGAAGTTGATGGATATGTTCCTTACAATGGAAAACGTACTCTACTTGCCTGGATGATTGATATGGGAATGGTCTTGCAAAATGGTAAGGGTAACAGGAGTGACATTCACTGTAGCTGCTGTAATGAAATCATAACAGTATCGGAGTTTGAAGCCCATGCAGGAAGCGAACTCTCTGATCCATTTAGAAATATATATACAGAGGGAGGAATTTCTCTCTTGCAATGCCTGCTAGACTTGTGGAATAACCAAGATGGATCTAAACGTAAAGGTTTTCATTTCGTTGATGTTGCTGGTGAAGACCCTAATGATGACACTTGTGGTATCTGTGGAGATGGTGGGGACCTGATCTGTTGTGATAGTTGCCCATTAACATTCCATCAAAGCTGCTTGGGTATAAAAAAGTTTCCATTTGGTGATTGGCACTGCATTTATTGCAGTTGCAAATTTTGTGGTCTGTTTGGAGGTGCCAGCAAAAGGGATGATGATGGTGATGTTACTGAGTCCGCATTATTCACATGCCCCACTGATGTGGACAAAAATATCACAGATCCTGTATTGAGGTGGATTGTGCCCAGATTGATGATTCCTGTGATGCATTTTGTGGATACAGATGTCAAGAATTACATGAGAGACTCAATATGCTTGTTGGGATCAAACATGAAATTGAAGACGGATTTTCCTGGACTCTAA 1440 0.4132 MFDLPDELLCTSSVSFRLLVEKCELNCDMGTGTNAVLVENENNRRVLNCWDGKKSINEDNAVVVVRKSRESDGYKKIQVKAEEVEAHECISSGYEEKKIKEGNGRRKLKRAWEAPQNRDDNAVDYRPRNARDYNDAVYVSLDGTTHWSITLAYNRLKKHYEDGDGEGAKDEGKVNGANKKAKKERQGSISSLGKSMKGKKRKQAFIEEDYSDVALPSRMSIQIKDHKRQKSRNNKQRVLLVCNVEKEIDSEVDGYVPYNGKRTLLAWMIDMGMVLQNGKGNRSDIHCSCCNEIITVSEFEAHAGSELSDPFRNIYTEGGISLLQCLLDLWNNQDGSKRKGFHFVDVAGEDPNDDTCGICGDGGDLICCDSCPLTFHQSCLGIKKFPFGDWHCIYCSCKFCGLFGGASKRDDDGDVTESALFTCPTDVDKNITDPVLRWIVPRLMIPVMHFVDTDVKNYMRDSICLLGSNMKLKTDFPGL 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1921 479 MobiDBLite consensus disorder prediction 163 187 - -
Lele14g1921 479 SUPERFAMILY FYVE/PHD zinc finger 348 401 IPR011011 -
Lele14g1921 479 MobiDBLite consensus disorder prediction 163 200 - -
Lele14g1921 479 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 345 437 IPR013083 -
Lele14g1921 479 SMART PHD_3 355 396 IPR001965 -
Lele14g1921 479 ProSitePatterns Zinc finger PHD-type signature. 356 395 IPR019786 -
Lele14g1921 479 Pfam Tify domain binding domain 282 327 IPR032308 -
Lele14g1921 479 PANTHER PHD FINGER PROTEIN 12 87 423 IPR042163 GO:0003714|GO:0045892
Lele14g1921 479 ProSiteProfiles Zinc finger PHD-type profile. 353 398 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1921 Lele-ChrLele14 25614602 25617272 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1921 122 400 PHD Transcription Factor Family AT5G36670 43.607 1.19e-73 250
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1473 05 9435277 9444263 Lele14g1921 14 25614602 25617272 CCT
Lele14g1921 14 25614602 25617272 Lele14g1921 14 25614602 25617272 ECH
Lele14g1921 14 25614602 25617272 Lele15g0417 15 2403980 2409803 hybridization
Lele14g1921 14 25614602 25617272 Lele16g0441 16 2378314 2384282 hybridization