Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1878 ATGGTGTGTGTGATTTCTCAGAGCGAAGCCAAGTCTTCTCTTTCGCACCTTTCAATCCCAATCAGATGGAAGAAGAATCTAGGGTTTGATAGATCCAAGTCCATCAAGGTCCGTCCTTTGATGCTTCTCTCTATTTTTCTTACTGGAAATTGGCTCGATTTCCGTACTTTGGCAGATTCTCTAGAAGCTGTCATGGAGGAGGTTGAAGAAGCTAACAGAGCGGCTGTTGAAAGCTGCCATAGAGTTCTAAGTCTTTTGTCACAGCGCCAGGATCAGGTTCCTTATGGCAAATTAATGGTGGAAACTGGCGAGGCTGTGTCCAGGTTCAAGAAAGTTGTTTCCTTGCTCAATAATGGTGTGGGTCATGCAAGAGTCAGGAAGCTCAAAAAACTTCAAACCCCTTTCCCTCTAAGTATTCTCTTGGACAATCCAAATTCCAAATCAAACCATTGTCCCAAAATTCTGCTGTCTCTGCAACCTAGCCCTTCTGACAATTCAATTCAGGAGTTGGCCTCAAACACTGGAAACTCACTGTCTCTGGGAAAACCATCTTTGGAATTAAGTTCAAGTGGCAAAAATCCCCTACACCTTGCTCCTCCAGCGGAATCGCTACACTATCACTTACTTCAGCAGCAGCAACAAAGAATATTGCTACAACAGCAACAAATGAAACACCAAGCAGAAATAAGGTTTCGAAAGAACAATAGTGGAATCAATCTGAATTTTGATAGCTCTAGCTGCACACCCACAATGTCATCTACTAGGTCTTTCATTTCTTCCTTAAGCGTAGATGGAAGCGTAGCTAACTTGGATGGGACTGGGAGTGCCTTCCATGTAATTGAAGCTCCACTCTCTTCAGATCAGAATTCACAACACCACAAGAGAAAGTGTTCTAGCAGAGATGAAGGTGGTGGGAAATGTTGGAGCAGTGCTAGATGCCATTGCTCAAAGAAGAGAAAGCATAGAGTGAAGAGGTCAATCAAGGTGCCTGCCATTAGCAACAAGCTTGCTGATATACCCCCTGATGATTATTCATGGAGAAAATATGGGCAAAAGCCAATCAAAGGCTCTCCTCATCCTAGTACAGACCTCGCAATTGAAATGCTATTCAGTGCCCTGTTTATTGAAGATACAAAAACTCCTTTCTTGTGGCATTTTGATATTGTTAACACAAACTCCTGCTTAGGATACTACAAGTGCAGCAGCTTGAGAGGGTGCCCTGCTAGGAAGCACGTGGAGAGGTGCTTGGAAGAGCCTTCAATGCTAATTGTTACATACGAAGGTGAGCACAACCACCCTAGAATATCAGCACAATCTGCAAATGCATGA 1329 0.4357 MVCVISQSEAKSSLSHLSIPIRWKKNLGFDRSKSIKVRPLMLLSIFLTGNWLDFRTLADSLEAVMEEVEEANRAAVESCHRVLSLLSQRQDQVPYGKLMVETGEAVSRFKKVVSLLNNGVGHARVRKLKKLQTPFPLSILLDNPNSKSNHCPKILLSLQPSPSDNSIQELASNTGNSLSLGKPSLELSSSGKNPLHLAPPAESLHYHLLQQQQQRILLQQQQMKHQAEIRFRKNNSGINLNFDSSSCTPTMSSTRSFISSLSVDGSVANLDGTGSAFHVIEAPLSSDQNSQHHKRKCSSRDEGGGKCWSSARCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPSTDLAIEMLFSALFIEDTKTPFLWHFDIVNTNSCLGYYKCSSLRGCPARKHVERCLEEPSMLIVTYEGEHNHPRISAQSANA 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1878 442 Pfam Plant zinc cluster domain 294 338 IPR018872 -
Lele14g1878 442 Gene3D WRKY domain 326 434 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele14g1878 442 Pfam WRKY DNA -binding domain 391 433 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele14g1878 442 Pfam WRKY DNA -binding domain 342 360 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele14g1878 442 SMART WRKY_cls 340 434 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele14g1878 442 Coils Coil 54 78 - -
Lele14g1878 442 SUPERFAMILY WRKY DNA-binding domain 338 361 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele14g1878 442 ProSiteProfiles WRKY domain profile. 335 435 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele14g1878 442 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 66 439 IPR044810 GO:0003700
Lele14g1878 442 SUPERFAMILY WRKY DNA-binding domain 388 434 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1878 Lele-ChrLele14 25361277 25363336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1878 65 439 WRKY Transcription Factor Family AT2G30590 51.202 3.29e-112 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lele14g1878 WRKY 3.5e-12 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g1878 14 25361277 25363336 Lele15g0461 15 2673238 2677119 hybridization
Lele14g1878 14 25361277 25363336 Lele16g0483 16 2648221 2649958 hybridization