Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1876 ATGGCGACGGAAGAGCCTGCAGTAGTTGTGGAATCTGTATCAGAACCAGCTGTTGCCGAGCCAGCTGAGGAGAAAGAGGTAGCAGGTGCTAGTGGTAAGACCAAGAAAGCTAAGGAGCCGAAGCCTAAGAAGGCTGCTGCTCCTAAATCTCGAAACCCTCCTGCGCATCCTCCTTATGAAGAGATGATCAAGGACGCAATTGTTACGCTGAAGGAGAGGACTGGTTCTAGCCAGTACGCGATTACCAAGTTTATGGAAGAGAAATACAAGCAGCTTCCGTCCAACTTCAGGAAGATCGTGTTACACCAATCAAAGAAGCTTGTGGCTGCCGGAAAGCTTGTTAAGGTCAAGGGCTCATTCAAGCTTCCCTCTGTTAAGTCATCGGCACCGAAGGGAACTGGGAATTCTGCTTCGGCAAAGAAGCCTGCAGCTGCTAAGCCCAAGGCTAAACGAGCTGCTAAGCCGAATGAGACGAAATCAATCAAGGCGGCAACTAAGGCTCGTCCTAAGCCTAAAGTAGTTGCCAAGGCAAAGCCTAAAGCGGCTGCCAAGCCGAAGGCCGCCGCTTCGAAACCTAAAGCTAAAGCTGTTGCTACGAAGCCCAAGGCTGCTGCGGCGAAGCCTAAGGCTGCGGCGTCGAAGCCAAAAGCTGCTGCTAAGCCGAAGCCTGCCGCAAGACCAAAGCCCAAGGAGAGACCTGCCAAGGCGTCGAGGACGTCGACCAGGACATCCCCGGGCAAGAAGGCCTCGGCCCCTAAACCGGCACCAAAGAAGGCTGCTGCTTCCAAGAAGGCTCCTGCTAAAGGCGTTAAGCCTAAGAGTGTGAAGTCTCCGGCAAAGAAGGCTCCGACAAAGAGAGGAAGGAAGTGA 870 0.5345 MATEEPAVVVESVSEPAVAEPAEEKEVAGASGKTKKAKEPKPKKAAAPKSRNPPAHPPYEEMIKDAIVTLKERTGSSQYAITKFMEEKYKQLPSNFRKIVLHQSKKLVAAGKLVKVKGSFKLPSVKSSAPKGTGNSASAKKPAAAKPKAKRAAKPNETKSIKAATKARPKPKVVAKAKPKAAAKPKAAASKPKAKAVATKPKAAAAKPKAAASKPKAAAKPKPAARPKPKERPAKASRTSTRTSPGKKASAPKPAPKKAAASKKAPAKGVKPKSVKSPAKKAPTKRGRK 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1876 289 MobiDBLite consensus disorder prediction 165 179 - -
Lele14g1876 289 SUPERFAMILY "Winged helix" DNA-binding domain 52 131 IPR036390 -
Lele14g1876 289 FunFam Histone H1 50 135 - -
Lele14g1876 289 Pfam linker histone H1 and H5 family 56 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele14g1876 289 MobiDBLite consensus disorder prediction 119 289 - -
Lele14g1876 289 MobiDBLite consensus disorder prediction 1 61 - -
Lele14g1876 289 CDD H15 53 131 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele14g1876 289 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 55 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele14g1876 289 MobiDBLite consensus disorder prediction 274 289 - -
Lele14g1876 289 Gene3D - 50 159 IPR036388 -
Lele14g1876 289 PANTHER HISTONE H1 32 273 - -
Lele14g1876 289 MobiDBLite consensus disorder prediction 18 46 - -
Lele14g1876 289 MobiDBLite consensus disorder prediction 150 164 - -
Lele14g1876 289 SMART h15plus2 53 119 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele14g1876 289 PRINTS Histone H5 signature 69 86 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele14g1876 289 PRINTS Histone H5 signature 196 215 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele14g1876 289 PRINTS Histone H5 signature 42 63 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele14g1876 289 PRINTS Histone H5 signature 144 158 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele14g1876 289 PRINTS Histone H5 signature 174 191 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1876 Lele-ChrLele14 25346189 25347155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1876 21 134 Single Myb Histone (SMH) Gene Family AT1G49950 29.167 5.10e-07 48.5