Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1858 ATGGATTTCCTTCATCATTTCCAAACCCAAGAGCTATCCCCTGCATATTCCAATTCCTCTGTTTCTCAAGAATCATTCAGTTGGGAAGACTTCTTCACCTTCGATTCCGTGGCAGGAATCGAATCTCAAGAAGTCTCCTCGCAAGTGGAAGTGACAGATACTGACGCATCCTCATCAATATCATCAACACCAGCACATCAGAGTGGTGGCAGCAAGAAAGGGAAGAGGCCGTACAGAGGAGTGAGGAGTAGGCCGTGGGGGAAATTCGCGGCGGAGATAAGGGACTCCACGAGGAATGGGGTGAGAGTGTGGATCGGGACGTTTGATACGGCGGAGGCGGCGGCTTTGGCGTACGACCAGGCAGCTTTCTGCATGAAGGGATCGATGGCGGTGCTGAATTTCCCGGAGCAAGTGGTGAGGGAGTCCCTGGAGAGCATGGCGAGTAAGCCATGGGAGGAAGGTTCGTCTCCTGTGTTGGCCCTCAAGAGAAAGCACACCTTGAGGCCAAGGAGGTCATCATCGTCATCGTCGTCTAGCCCTAAAAAATCCAGAAAGAATATGAGCATCAGCTCCTCCAGGGATAACCAGGCTTCCAACAACAACGTGCTAGTGTTGGAGGATTTGGGGAATGAATATTTGGAGCACCTCTTGAGCTTGACCTCTTCTGAGTTTGTTTAA 678 0.5118 MDFLHHFQTQELSPAYSNSSVSQESFSWEDFFTFDSVAGIESQEVSSQVEVTDTDASSSISSTPAHQSGGSKKGKRPYRGVRSRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFCMKGSMAVLNFPEQVVRESLESMASKPWEEGSSPVLALKRKHTLRPRRSSSSSSSSPKKSRKNMSISSSRDNQASNNNVLVLEDLGNEYLEHLLSLTSSEFV 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1858 225 MobiDBLite consensus disorder prediction 171 196 - -
Lele14g1858 225 Gene3D AP2/ERF domain 77 137 IPR036955 GO:0003700|GO:0006355
Lele14g1858 225 SMART rav1_2 77 141 IPR001471 GO:0003700|GO:0006355
Lele14g1858 225 CDD AP2 78 137 IPR001471 GO:0003700|GO:0006355
Lele14g1858 225 MobiDBLite consensus disorder prediction 154 196 - -
Lele14g1858 225 MobiDBLite consensus disorder prediction 45 69 - -
Lele14g1858 225 FunFam Ethylene-responsive transcription factor 2 76 136 - -
Lele14g1858 225 ProSiteProfiles AP2/ERF domain profile. 77 135 IPR001471 GO:0003700|GO:0006355
Lele14g1858 225 PANTHER DNA-BINDING DOMAIN 38 218 IPR044808 GO:0003700|GO:0009873
Lele14g1858 225 MobiDBLite consensus disorder prediction 45 82 - -
Lele14g1858 225 SUPERFAMILY DNA-binding domain 78 136 IPR016177 GO:0003677
Lele14g1858 225 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Lele14g1858 225 PRINTS Ethylene responsive element binding protein signature 101 117 IPR001471 GO:0003700|GO:0006355
Lele14g1858 225 Pfam AP2 domain 78 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1858 Lele-ChrLele14 25225250 25225927 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1858 29 217 AP2-EREBP Transcription Factor Family AT2G31230 49.261 1.69e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele14g1858 AP2 1.2e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1384 05 8723775 8724512 Lele14g1858 14 25225250 25225927 CCT
Lele14g1858 14 25225250 25225927 Lele15g0482 15 2823323 2824006 hybridization
Lele14g1858 14 25225250 25225927 Lele16g0503 16 2781219 2781899 hybridization