LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele14g1856	ATGGGGAGAGCACCGTGCTGTGAGAAAATGGGATTGAAGAAAGGGCCTTGGTCTGCCGAAGAAGATCAGATTCTCATCACTTATATCCAATCTCACGGTCACGGCAATTGGCGAGCCCTTCCCAAACAAGCTGGGCTTTTAAGGTGTGGCAAGAGTTGCAGACTCCGATGGACCAACTATCTGAGGCCTGATATCAAACGCGGTAACTTCATTCCTGAAGAAGAGCACACCATCTTCCGCTTGCATCATCTCTTGGGAAACAGGTGGTCAGCAATTGCAGCGAGATTACCGGGACGCACAGACAATGAGATAAAAAATGTGTGGCACACCCGCTTGAAGAAGAGGCTCCCTCAAAACCAACAAAACCTCCCCACAAATCGGAACCCTAAACACAAAAAACAAAACCCCGTGACTTCTTCCACCCATGACGACGACGACGACGATCACGCAGTGATCAAAACCCAGAGCCAACAGCACTGTGCCCCACTGTCTCCCCCACAATGTTCTATCAGTATCAGTGATGCCTCCACCCTCACTACCAGCGACAACATCGAACGTAAAACTAACGGCATGTCCACAAATGATGTCGAAACGCTATCCCAGAATATAGAAACTTTGGACGAGGATTTCTGGTCGGAAGTCCTGTCGGCTGATAATTCTGGTGAGAGCAGCGAACTTGCAGGCTTGGCTGCTTATGCTGCTAACCCAAACTTCCAATTCCCATTCTCTCCACTCACGGCTGAACCAAGTCTTTGCGATGGCTTTAGCATCGACTTTTGGGGCGATAACCTTGACACCAGACCCCACGAGTTAACAGAGTTATTACCACGATTATGA	837	0.491	MGRAPCCEKMGLKKGPWSAEEDQILITYIQSHGHGNWRALPKQAGLLRCGKSCRLRWTNYLRPDIKRGNFIPEEEHTIFRLHHLLGNRWSAIAARLPGRTDNEIKNVWHTRLKKRLPQNQQNLPTNRNPKHKKQNPVTSSTHDDDDDDHAVIKTQSQQHCAPLSPPQCSISISDASTLTTSDNIERKTNGMSTNDVETLSQNIETLDEDFWSEVLSADNSGESSELAGLAAYAANPNFQFPFSPLTAEPSLCDGFSIDFWGDNLDTRPHELTELLPRL	278

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele14g1856	278	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Lele14g1856	278	FunFam	MYB-related transcription factor	13	66	-	-
	Lele14g1856	278	Gene3D	-	13	66	-	-
	Lele14g1856	278	MobiDBLite	consensus disorder prediction	113	135	-	-
	Lele14g1856	278	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Lele14g1856	278	MobiDBLite	consensus disorder prediction	154	174	-	-
	Lele14g1856	278	MobiDBLite	consensus disorder prediction	136	153	-	-
	Lele14g1856	278	MobiDBLite	consensus disorder prediction	111	174	-	-
	Lele14g1856	278	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	65	IPR017930	-
	Lele14g1856	278	SMART	sant	13	63	IPR001005	-
	Lele14g1856	278	SMART	sant	66	114	IPR001005	-
	Lele14g1856	278	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	1	224	-	-
	Lele14g1856	278	Gene3D	-	69	142	-	-
	Lele14g1856	278	SUPERFAMILY	Homeodomain-like	10	108	IPR009057	-
	Lele14g1856	278	CDD	SANT	16	61	IPR001005	-
	Lele14g1856	278	CDD	SANT	72	112	IPR001005	-
	Lele14g1856	278	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	66	116	IPR017930	-
	Lele14g1856	278	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Lele14g1856	278	Pfam	Myb-like DNA-binding domain	67	110	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele14g1856	Lele-ChrLele14	25214486	25215872	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele14g1856	1	225	MYB Transcription Factor Family	AT2G31180	54.667	3.26e-78	236

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele14g1856		Myb_DNA-binding	4.9e-14	CL0123