Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1840 ATGAAGTGCTTATGCTCAGAGGAGCCGTCAAGAGAAGAAGATGATACGGTTCCTTCATCTGAATCTCTTGCAAGAAAGGGTTATTCAGCAAATGGCATTTCTTGTCAGACCAGTCGAATTGACAAGAAGCCAGATACTAGCAATATCGAGGAAGTTGAATCATCCCTTTGTGGAAGTGATTGTTTGAATTATGAGGCTCTTGGAAAGTTTAAAGGAGAAGGGGTAAGTTTTGCTTGCACATTGCTTGAAAAATTGGAAGGAAGATGTGATCAGTTAGCAAGTTCTGCCTATTGCTTCCTTGGTCTTTCACTTTCAGCACATTCAAAATCGTCCATTTCTGATTCTGAGAGGTGTAAAAGACAATCTGAGGCACTTCACAACCTGGAAATTGCCTCCAGAATGTCCGGAATGAGAAGCCCGCTGATACTATACCATCTCAGTTTAGAATATGCTGAACAGAGAAAATTGGATGCTGCCCTTGATTATGCCAAATGCTTTCTAGAACTGGAAGCAGGGTCTAATGTTAAAGGGTGGTTATTATTAGCCAGGATATTATCAGCTCAAAGTCGATTTTTGGACGCTGAATCTGTTATCAATGCTGCTTTGGACCAGACTGGGAAATGGGATCAAGGAAATTTGCTGCGAACAAAAGCTAAACTTCAGATTGCACAGGGCAATTTAAGAAGTGGCATGAAAACGTATATTCAGCTTCTTGCTGTTCTTCAAATTCAGAGTACAAACTTTGGTTCTGAGAAGAAGCTAAATAAGGACATTAAAAATCATACCCAGAGAATGGAAATGGAAATATGGCATGATCTTGCTTTCTTATACATAAGCCAGTCAAAATGGCATGATGCAGAAGCGTGTCTTTCAAAGTCTAAGGCCATCAAACTATACTGTGCTTCTAGATGTCACGCAACTGGTCTAATATATGAAGCAAAGGGCCTTTATAAAGAGGCTCTAAAAGCTTATCGTGAAGCTTTGGATATTAATCCCATTCACGTCCCAAGCTTGATCTCTAGTTCTCTGGTTCTCAGAAGGTGCAGTAAAGAATTGAATTCTGCAGTTCGAGGCTATCTGATGGATGCTCTACGGCATGACAGAATGAATGCTTCTGCTTGGTACCATCTTGGCCTTCTTCACAAGGCTGAGGGTACAGTATCGTCATTAGTGGAAGCCATGGACTGTTTCAAAGCTGCACAATATCTTGAAGATACTGCGCCAGTTGAGCGTTTCAGTGTTTTTTACGAAAACCGAAAGACAAAGATTCAGAATCGAGAAATTGTTTGGGATGAGGCAAAATGCCAACAAAGATTGAAGTATTATTTCTCCAATGTAAACAAGACTATCCAGTATCCAGTATCCAGTATACACCACTTCAGCAAAACAATGTGCCGACAGAGCTGGGTCAGGAATTAA 1419 0.4066 MKCLCSEEPSREEDDTVPSSESLARKGYSANGISCQTSRIDKKPDTSNIEEVESSLCGSDCLNYEALGKFKGEGVSFACTLLEKLEGRCDQLASSAYCFLGLSLSAHSKSSISDSERCKRQSEALHNLEIASRMSGMRSPLILYHLSLEYAEQRKLDAALDYAKCFLELEAGSNVKGWLLLARILSAQSRFLDAESVINAALDQTGKWDQGNLLRTKAKLQIAQGNLRSGMKTYIQLLAVLQIQSTNFGSEKKLNKDIKNHTQRMEMEIWHDLAFLYISQSKWHDAEACLSKSKAIKLYCASRCHATGLIYEAKGLYKEALKAYREALDINPIHVPSLISSSLVLRRCSKELNSAVRGYLMDALRHDRMNASAWYHLGLLHKAEGTVSSLVEAMDCFKAAQYLEDTAPVERFSVFYENRKTKIQNREIVWDEAKCQQRLKYYFSNVNKTIQYPVSSIHHFSKTMCRQSWVRN 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1840 472 MobiDBLite consensus disorder prediction 1 29 - -
Lele14g1840 472 Pfam Tetratricopeptide repeat 304 332 IPR013105 -
Lele14g1840 472 SUPERFAMILY TPR-like 144 344 IPR011990 GO:0005515
Lele14g1840 472 PANTHER PROTEIN NPG1 71 413 IPR043376 -
Lele14g1840 472 Pfam Tetratricopeptide repeat 148 204 - -
Lele14g1840 472 Gene3D Tetratricopeptide repeat domain 61 248 IPR011990 GO:0005515
Lele14g1840 472 ProSiteProfiles TPR repeat profile. 301 334 IPR019734 GO:0005515
Lele14g1840 472 Gene3D - 250 451 - -
Lele14g1840 472 SMART tpr_5 140 173 IPR019734 GO:0005515
Lele14g1840 472 SMART tpr_5 267 300 IPR019734 GO:0005515
Lele14g1840 472 SMART tpr_5 175 208 IPR019734 GO:0005515
Lele14g1840 472 SMART tpr_5 301 334 IPR019734 GO:0005515
Lele14g1840 472 SMART tpr_5 371 407 IPR019734 GO:0005515
Lele14g1840 472 SUPERFAMILY TPR-like 267 385 IPR011990 GO:0005515
Lele14g1840 472 MobiDBLite consensus disorder prediction 1 20 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1840 Lele-ChrLele14 25101481 25106816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1840 73 412 Calmodulin-binding Proteins AT4G28600 48.555 1.58e-97 308
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g1840 14 25101481 25106816 Lele15g0505 15 2962383 2964582 hybridization
Lele14g1840 14 25101481 25106816 Lele16g0526 16 2904108 2905120 hybridization