Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1816 ATGACGGAGTTTCCTCGGTCTCATGATCAGAACTTGCTCGCATCCTCATCTTCCCGCAACTTCAACAGCAGGGGTAGAAATGTAGTTAGTTTGCTAGCACGGAGAGAGATTTCACCCAGGACTAAACATGTGCCGAAACACCACTGGGGAGAAATGTCTAGGCCAAAATCTGGTCCCTTCTCTCGTCTTAAAAATGAAGCGGTGAGAGATGCAAGACGTGGTCTCCTCTCATGGGTTGAGACAGAGTCATTACGGCACTTATCTGCTAAGTACTGCTCTTTACTGCCTCCCCCACGGTCTACTATAGCTGCAGCATTTAGTTCAGATGGAAAAGTGCTTGCATCAACACATGGTGACCACACTGTAAAGATAATTGATTGTGAAACTGGAAGGTGCTTAAAGGTGTTAATGGGCCATAGGAGGACGCCTTGGGTGGTTAGGTTCCATCCACTTAACCCTCAAATACTTGCTAGTGGGAGCTTGGATCAAGAAGTTTGTTTATGGGATGTTAAGACATCAAAGTGCCTATTTTTTTATCGTTTCTATCGCTCCATTGCATCCATTGCTTTTCATGCCAATGGGGAAATACTTGCTGTTGCATCAGGCCATAAGTTGTATATGTGGCCCTACAACAAGAGAGGTGAAGAATCCTCACCAACATTGGTGCTGAAGACGAGGCGTTCACTTCGGGCTGTTCATTTCCACCCACATGCCGCACCATACCTTTTAACTGCTGAGGTCAATGATATTGACTCTTCAGATTCCATCATGACAAAGGCAACGTCCCTTGGTTATTTACAATACCCTCCACCTGCTGTTTTTGTAACAGATGCTCATTCTAGGGATCGTGTTAATTTCTCCAGTGAACTACCCCTTATGTCACCATTCTTCTTCATGCCTCCATATACTATAGGTGACTCAAGAATAGAACTACAGCGGGATAATCATGTTTCTGGAGTTGAATCTTCTGTTTCTGTGCAGCTTCAAGCAGACATGAATGCAACAGAACAAAATGATGTTACAGTGTCTCCCATGGATACATCTTCTGAATTTACATCTGGTTCTCAATCTAATACAGGGTATACTGCCCATGATGCTTCCTCTAATAGAATGGGAATAGGCGCCACTAACCTCAAAATGGATGGTATCTCTATTGATGAAACAGAATTATCTGAAAGAAGACAACACGGAAACTCTACCAACGCTCATTCTTTTAATGGTAGATTGCATGGACTAACTAGACAAGCTGGAAATCAAGAGGCTCTCTTAGAATTAAGTCAATTTCTCCAGTGTGTCCCTTCAAAAGACTCAGGTGGGTGGGAGCTACCTTTTCTTCAAGGATGGGTAATGGGCCAAAGCCTAGTTGGTGCTCCCTCTATGCTTTCTCACATGGGTGGTAGTGGTGACAGTCTAGCTCAACAGATTAGTTCTTCCATTCTGCCATCTAATTTGTCCACTAGTAAAGTTGAGGAAGTAATGCCAGGCAGCATCACCATACCAGGAGCTCCTGTGAGATCAGGTTTACAGAATTATTTCACGCATTCCCTGGTACCAGAATCTGAATATGGGAATTATGTAGCTTCAGTTAATAAGCTGCATGATGGGACTAATATCCAAACTATTGCAAGTCGGATCCAGTCAGAACTTGCAACATCAATGGCGGCTGCTGTTTCTGCCGAGTTGCCTTGCACTGTGAAGCTAAGAGTTTGGTCATATGATATACAAAATCCTCGTGCCCCTCTTAGTGTTGATAGTCGCTGTCTAACCATACCACATGCTGTCCTATGCAGTGAAATGGGGGCCCACTTCTCACCATGTGGTAGGTTTTTGGCAGCTTGTGTCGCATGTATGGTTCCTCATGCCGAAGCTGATTCAGGGTTACAAGCACTAGTTCACCAGGACCATGGAGTTGCAACGTCACCAACTCGACATCCTACCTCAGCACATCAAGTCGTGTATGAGCTTCGGATATATTCCCTGGAAGAGGCAACATTTGGATCAGTGCTTGCATCTCAAGCAATTAGAGCGGCACACTGTCTGACTTCTATCCAGTTCTCGCCCACATCTGAGCACATACTACTTGCATATGGTCGACGGCATGCCTCTCTTCTAAAATGCATTGCCATTGATGGGGAAACGACCCTACCTATTTATACAGTGTTAGAGGTGTATAGAGTATCGAATATGGAACTTGTCAGTGTTCTCCCTAGTGCAGAGGATGAGGTCAATGTTGCTTGCTTTCATCCTTTTGCTGGGGGAGGGATTGTATATGGAACAAAGGAAGGAAAGCTTAGGGTGCTACGGTGTGATGGTGCTCATGCGGTGAATGGCACGTTTGGACAGATGATGGAGGTTTATAGTTCAGTGATTCCGCATCACCAGGCACAACCTTTTCCTCTGTCGATGGTAGGGCAGAACCCACACAAGCACAGAGCAATAGAGGTAAAAAGGGCATACTTGGGCCAGCACTTGATGTTCAGCTCCGCCAAACGAGACTCTGGAGGGTTTCTTTCAACGATGATTCTGAGGTTTGAATTGGAACCTGCGGCCATGGAAGGAACAGAGAGGAAGACGAGTATGAGAAAAGAGCTTTTGGCTCACTGTCACTGCCTGATCTTGTGCCTACTCTGTGTGGTTCCGATCGCATTCATGGCTACTCAGGGTCAAGTCATTACCTGCAAAGCGGCGGTGGCCTGGGAACCCAACAAGCCATTGACTATTGAAGACGTTCAGGTGGCCCCCCCGCAGGCTGGTGAGGTTCGAGTCAATATTATTTACACTGCTCTCTGTCATACCGATGCTTACACTTGGAGTGGTCAGGATCCAGAAGGTCTATTCCCCTGTATTCTTGGTCATGAAGCTGCCGGAATTGTAGAAAGTGTTGGAGAGGGTGTTACTGAAGTTCAGCCTGGAGATCATGTCATCCCGTGTTACCAGGCTGAATGTAGGGAATGCAAGTTTTGCAAATCTGGCAAAACAAACCTTTGTGGCAAAGTCCGTTCTGCCACTGGAGTTGGTGTCATGCTGAACGACCGCAAGAGTCGTTTCTCTATTAATGGAAAGCCCATCTATCATTTTATGGGAACCTCAACTTTTAGTCAATACACTGTTGTTCATGATGTTAGTGTAGCTAAGATTGATCCAAAAGCTCCTCTAGAGAAAGTTTGTCTTCTCGGATGTGGTGTCCCAACTGGTCTTGGAGCTGTCTGGAACACTGCAAAGGTTGAACCAGGTTCAATCGTAGCTATTTTTGGCCTTGGAACAATTGGACTTGCTGTTGCAGAGGGTGCAAAAGCTGCCGGTGCATCACGGATCATTGGCATAGACCTTAACAGCAAAAAGTTTGATATAGCAAAGAACTTTGGCGTAACTGAATTTATCAATCCAAAAGATTACGACAAACCAATTCAGCAGGTCATAGTTGATCTCACAGACGGTGGAGTTGATTATAGTTTTGAGTGCATTGGAAATGTCTCAGTGATGAGGTCTGCTTTGGAATGCTGTCATAAGGGCTGGGGGACATCAGTTATTGTGGGTGTTGCAGGATCAGGACAAGAAATATCGACTCGCCCTTTCCAGTTGGTGACTGGCCGTGTCTGGAAGGGAACTGCTTTTGGTGGCTTCAAGAGCCGCTCACAAGTTCCTATGCTTGTAGACAAGTACATGAAGAAGGAAATCAAGATCGATGAGTACATTACCCACACATTAACTCTTGCGGAGATCAACAAAGCATTTGATCTCATGCATGAAGGGGGGTGCCTCCGATGTGTGCTAGCGGTGGATGTGTGA 3789 0.4561 MTEFPRSHDQNLLASSSSRNFNSRGRNVVSLLARREISPRTKHVPKHHWGEMSRPKSGPFSRLKNEAVRDARRGLLSWVETESLRHLSAKYCSLLPPPRSTIAAAFSSDGKVLASTHGDHTVKIIDCETGRCLKVLMGHRRTPWVVRFHPLNPQILASGSLDQEVCLWDVKTSKCLFFYRFYRSIASIAFHANGEILAVASGHKLYMWPYNKRGEESSPTLVLKTRRSLRAVHFHPHAAPYLLTAEVNDIDSSDSIMTKATSLGYLQYPPPAVFVTDAHSRDRVNFSSELPLMSPFFFMPPYTIGDSRIELQRDNHVSGVESSVSVQLQADMNATEQNDVTVSPMDTSSEFTSGSQSNTGYTAHDASSNRMGIGATNLKMDGISIDETELSERRQHGNSTNAHSFNGRLHGLTRQAGNQEALLELSQFLQCVPSKDSGGWELPFLQGWVMGQSLVGAPSMLSHMGGSGDSLAQQISSSILPSNLSTSKVEEVMPGSITIPGAPVRSGLQNYFTHSLVPESEYGNYVASVNKLHDGTNIQTIASRIQSELATSMAAAVSAELPCTVKLRVWSYDIQNPRAPLSVDSRCLTIPHAVLCSEMGAHFSPCGRFLAACVACMVPHAEADSGLQALVHQDHGVATSPTRHPTSAHQVVYELRIYSLEEATFGSVLASQAIRAAHCLTSIQFSPTSEHILLAYGRRHASLLKCIAIDGETTLPIYTVLEVYRVSNMELVSVLPSAEDEVNVACFHPFAGGGIVYGTKEGKLRVLRCDGAHAVNGTFGQMMEVYSSVIPHHQAQPFPLSMVGQNPHKHRAIEVKRAYLGQHLMFSSAKRDSGGFLSTMILRFELEPAAMEGTERKTSMRKELLAHCHCLILCLLCVVPIAFMATQGQVITCKAAVAWEPNKPLTIEDVQVAPPQAGEVRVNIIYTALCHTDAYTWSGQDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGVMLNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPKAPLEKVCLLGCGVPTGLGAVWNTAKVEPGSIVAIFGLGTIGLAVAEGAKAAGASRIIGIDLNSKKFDIAKNFGVTEFINPKDYDKPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAGSGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPMLVDKYMKKEIKIDEYITHTLTLAEINKAFDLMHEGGCLRCVLAVDV 1262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1816 1262 PANTHER ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1 23 779 - -
Lele14g1816 1262 SMART WD40_4 88 126 IPR001680 GO:0005515
Lele14g1816 1262 SMART WD40_4 728 768 IPR001680 GO:0005515
Lele14g1816 1262 SMART WD40_4 129 169 IPR001680 GO:0005515
Lele14g1816 1262 SMART WD40_4 172 209 IPR001680 GO:0005515
Lele14g1816 1262 Pfam Alcohol dehydrogenase GroES-like domain 918 1045 IPR013154 -
Lele14g1816 1262 Gene3D - 1065 1203 - -
Lele14g1816 1262 FunFam S-(hydroxymethyl)glutathione dehydrogenase 1065 1203 - -
Lele14g1816 1262 SUPERFAMILY GroES-like 1210 1258 IPR011032 -
Lele14g1816 1262 MobiDBLite consensus disorder prediction 342 368 - -
Lele14g1816 1262 FunFam S-(hydroxymethyl)glutathione dehydrogenase 896 1084 - -
Lele14g1816 1262 FunFam Activating molecule in BECN1-regulated autophagy protein 83 263 - -
Lele14g1816 1262 CDD alcohol_DH_class_III 891 1258 IPR014183 GO:0006069|GO:0008270|GO:0051903
Lele14g1816 1262 ProSitePatterns Trp-Asp (WD) repeats signature. 156 170 IPR019775 -
Lele14g1816 1262 Gene3D - 896 1255 - -
Lele14g1816 1262 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1051 1224 IPR036291 -
Lele14g1816 1262 SUPERFAMILY WD40 repeat-like 102 245 IPR036322 GO:0005515
Lele14g1816 1262 MobiDBLite consensus disorder prediction 42 61 - -
Lele14g1816 1262 Gene3D - 100 262 IPR015943 GO:0005515
Lele14g1816 1262 SUPERFAMILY WD40 repeat-like 601 768 IPR036322 GO:0005515
Lele14g1816 1262 TIGRFAM adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 893 1259 IPR014183 GO:0006069|GO:0008270|GO:0051903
Lele14g1816 1262 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 951 965 IPR002328 GO:0008270|GO:0016491
Lele14g1816 1262 Pfam Zinc-binding dehydrogenase 1089 1210 IPR013149 -
Lele14g1816 1262 ProSiteProfiles Trp-Asp (WD) repeats profile. 136 178 IPR001680 GO:0005515
Lele14g1816 1262 SUPERFAMILY GroES-like 886 1081 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1816 Lele-ChrLele14 24973621 24986104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1816 893 1214 Monolignol Biosynthesis Gene Families AT1G72680 27.660 4.82e-16 79.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1189 06 7471130 7480201 Lele14g1816 14 24973621 24986104 CCT
Lele07g1381 07 8395248 8403696 Lele14g1816 14 24973621 24986104 CCT
Lele08g1183 08 7466075 7475286 Lele14g1816 14 24973621 24986104 CCT
Lele14g1816 14 24973621 24986104 Lele15g0530 15 3094996 3098046 hybridization
Lele14g1816 14 24973621 24986104 Lele16g0546 16 3034691 3036694 hybridization