Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1797 ATGGCTTTGCAGGCGGCCATGGAGAGCGGTGGGGGAGCTGGAGGTATTGACAGGGTGCTTGAAAGAGAAGCTTCGAGAAGATTGTTTGTGCTAGTGGGCAATTGCAGAACAATGGTGGGTATCGTCTCATTGATAACAGGGAGGGCAGGCCCGAGTGGGTTTGGTTCTGCTTCAACTGCAGAGAAAGTCACCGAAGGAATTGATGCCTGCAATCTCACTGCCATTATCACAGGAGGAGCAAGTGGGATTGGCTTAGAGACAGCAAGAGTGTTAGCTCTTCGAAAGGTTCATGTGATTATTGCTGCAAGGAATATGGAAGCTTGCAAGAAAGCAAAGAAGCTTATTCTTGACCAAAACCAGTCTGCTCGTATCGATATACTGAAACTCGACCTTGCCTCTGTCAAGTCCATCAGAGCATTTGTTGACAACTTCACCGCTCTTGATCTTCCTCTCAACATTTTAATAAACAATGCTGGAGTTATGTTCTGCCCTTTCCAACTCTCACAGGATGGGATTGAGATGCAGTTCGCAACAAATCATATCGGACATTTCCTCTTGACCAATATTCTTCTTGACAAGATGAAACAAACTGCAAAAGCCACTGGAATTGAGGGAAGGATCGTGAATTTGTCATCAGTTGCCCATAATTATACTTACTTGAAGGGCATTCGATTTGAGAAGATCAATAATCGAATTGGTTACTGTGACAAGAAGGCATATGGGCAGTCCAAGTTGGCTAACATACTTCACTCAAATGAGCTAGCTCGCCGCCTGCAGGAAGAAGGTGTGAACATTACAGCCAACTCAGTCCACCCAGGAGTGATAATGACTCCTCTCATGAGACATTCTACCTTCACTATGAATCTTCTGAAAGTGTTCACCTTTTACATATGGAAGAATGTCCCACAGGGAGCAGCCACAACATGCTATGTTGCCCTTCACCCCAGAGTGAAAGGTGTGAATGGGAAATACTTTCAGGATTGTAATGAGCATAAGCCGAGTTCATCTGCCAGAAACCAAGTGTTAGCCAGGAAACTCTGGGATTTCAGCAACACGGTGATCAATTCACTCTCCAAGGCTTAG 1083 0.4515 MALQAAMESGGGAGGIDRVLEREASRRLFVLVGNCRTMVGIVSLITGRAGPSGFGSASTAEKVTEGIDACNLTAIITGGASGIGLETARVLALRKVHVIIAARNMEACKKAKKLILDQNQSARIDILKLDLASVKSIRAFVDNFTALDLPLNILINNAGVMFCPFQLSQDGIEMQFATNHIGHFLLTNILLDKMKQTAKATGIEGRIVNLSSVAHNYTYLKGIRFEKINNRIGYCDKKAYGQSKLANILHSNELARRLQEEGVNITANSVHPGVIMTPLMRHSTFTMNLLKVFTFYIWKNVPQGAATTCYVALHPRVKGVNGKYFQDCNEHKPSSSARNQVLARKLWDFSNTVINSLSKA 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1797 360 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 160 IPR002347 -
Lele14g1797 360 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 240 259 IPR002347 -
Lele14g1797 360 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 205 213 IPR002347 -
Lele14g1797 360 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 73 332 IPR036291 -
Lele14g1797 360 PRINTS Glucose/ribitol dehydrogenase family signature 240 259 IPR002347 -
Lele14g1797 360 PRINTS Glucose/ribitol dehydrogenase family signature 263 280 IPR002347 -
Lele14g1797 360 PRINTS Glucose/ribitol dehydrogenase family signature 199 215 IPR002347 -
Lele14g1797 360 PRINTS Glucose/ribitol dehydrogenase family signature 149 160 IPR002347 -
Lele14g1797 360 PRINTS Glucose/ribitol dehydrogenase family signature 73 90 IPR002347 -
Lele14g1797 360 Pfam short chain dehydrogenase 73 219 IPR002347 -
Lele14g1797 360 Gene3D - 68 357 - -
Lele14g1797 360 CDD retinol-DH_like_SDR_c_like 73 347 - -
Lele14g1797 360 PANTHER RETINOL DEHYDROGENASE 51 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1797 Lele-ChrLele14 24832430 24835769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1797 72 279 Miscellaneous Gene Families AT2G29150 27.700 4.42e-07 48.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1161 06 7210157 7216213 Lele14g1797 14 24832430 24835769 CCT
Lele07g1345 07 8131965 8134821 Lele14g1797 14 24832430 24835769 CCT
Lele08g1153 08 7212649 7216152 Lele14g1797 14 24832430 24835769 CCT
Lele05g1296 05 8072172 8074974 Lele14g1797 14 24832430 24835769 CCT
Lele14g1797 14 24832430 24835769 Lele15g0555 15 3274311 3275877 hybridization
Lele14g1797 14 24832430 24835769 Lele16g0569 16 3206358 3207942 hybridization