Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1788 ATGGAGTCTCTGCCCAGACTTCATCGCTGTCGCCAACCGCTTCCATCCTCACTCAATCATCTCCCTTCTTCACTATCAAATCCCTTATCCTCCGTCTCCTTCAGGCCCCTACCACCACGTGTTTCGCCGTCGCAATTCTCGTCTTCTTCTTTCAGATCATCGCCCATTAGAGCCGTATCCTGGCCGTCAGAATCGTTCTCCGCCTCTGCTTTCCGTAGACCTCGAACCACATTACCACAGTTGCTTCAAACCCTAAACTCCCTTTTTTCTCCCGTCATCCGAACCACCTGCACCGTCATAACAGCGGCTATGTTTTTCTACACGCGTCTTCACCACAAGCCCGCCATTGCGGCCCCGCTCGTGACGCCCACGGTGGAGTCGATGGAAAATCCTTCGAAGGAAGAAAATCAAAGACCTATTGAAGAAAAATTAAGCAACAATCCCAATGATACCGAGGCTCTTCGGTCGCTCATCGAGGTAAAGGTCAGAGCGCGCAAAATTGAGGAAGCAATCCAGGTTATAGACCGTTTAATTGAGCTCGAACCGGAAGAGTTTGAGTGGCCACTGCTGAAGGCTCACATGTATGTTTACAATGGTGACTACGAATCAGCTAAAGAGAAGTTCGAAGAAATTCTAAAGAAAGATCCCTATCGTGTCGAGGCCTATCATGGCCTAGTAATGGCAGCTTCGGAATCGGATAAGCCGTTGGAGGATTTGGCAAAGAGGGTTGAAGAAGCAGTGGAATTGTGCAAAAACCAAAAGCGGGAATCGGAGGTCAGGGATTTGAGGCTCTTGATTGCGCAGATTAAAGTCATGGAGGGAGAATTTAATGATGCGCTGAAGGCCTATCAGGAGCTTGTAAAGGAAGAACCAAAGGATTTCAGGCCTTACTTATGTCAGGGGATCATATATACTATTCTAAGAAAGAAAGATGAAGCTGAAAAACAATTTGATAAGTTCCGGAGGCTTATCCCTAAGAACCATCCTTACAGAGAGTATTTCGAGGATAATATGTTTGAAATGAATGTAATTTCACGGAAGGCAGAGAGGGAGGGAGCGGGTGCGGAGAACTGA 1074 0.473 MESLPRLHRCRQPLPSSLNHLPSSLSNPLSSVSFRPLPPRVSPSQFSSSSFRSSPIRAVSWPSESFSASAFRRPRTTLPQLLQTLNSLFSPVIRTTCTVITAAMFFYTRLHHKPAIAAPLVTPTVESMENPSKEENQRPIEEKLSNNPNDTEALRSLIEVKVRARKIEEAIQVIDRLIELEPEEFEWPLLKAHMYVYNGDYESAKEKFEEILKKDPYRVEAYHGLVMAASESDKPLEDLAKRVEEAVELCKNQKRESEVRDLRLLIAQIKVMEGEFNDALKAYQELVKEEPKDFRPYLCQGIIYTILRKKDEAEKQFDKFRRLIPKNHPYREYFEDNMFEMNVISRKAEREGAGAEN 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1788 357 Coils Coil 236 260 - -
Lele14g1788 357 MobiDBLite consensus disorder prediction 126 148 - -
Lele14g1788 357 Pfam Tetratricopeptide repeat 190 246 - -
Lele14g1788 357 ProSiteProfiles TPR repeat profile. 260 293 IPR019734 GO:0005515
Lele14g1788 357 SMART tpr_5 294 327 IPR019734 GO:0005515
Lele14g1788 357 SMART tpr_5 260 293 IPR019734 GO:0005515
Lele14g1788 357 SMART tpr_5 185 218 IPR019734 GO:0005515
Lele14g1788 357 SMART tpr_5 151 184 IPR019734 GO:0005515
Lele14g1788 357 PANTHER TRANSMEMBRANE PROTEIN 205 329 - -
Lele14g1788 357 Pfam Tetratricopeptide repeat 263 292 IPR019734 GO:0005515
Lele14g1788 357 ProSiteProfiles TPR repeat profile. 151 184 IPR019734 GO:0005515
Lele14g1788 357 SUPERFAMILY TPR-like 142 330 IPR011990 GO:0005515
Lele14g1788 357 Gene3D Tetratricopeptide repeat domain 103 344 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1788 Lele-ChrLele14 24786478 24787551 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1140 06 7079454 7080278 Lele14g1788 14 24786478 24787551 CCT
Lele08g1132 08 7089831 7090631 Lele14g1788 14 24786478 24787551 CCT
Lele05g1277 05 7953651 7959275 Lele14g1788 14 24786478 24787551 CCT
Lele14g1788 14 24786478 24787551 Lele15g0565 15 3339144 3340229 hybridization
Lele14g1788 14 24786478 24787551 Lele16g0579 16 3255076 3256149 hybridization