Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1782 ATGAGTTCGGCTCCATTGACAGTGACCTGCCTCCCCACATCAAAGAGCAGAGCCTTTGCCGAAACCGGAAAAGATGATTCGTCGGAGTTACAGTTCAGAGATATGGCTGAGGCTGATTGTGATTGGGATGCCGCCTTTGAAGTGGGAAATTCTTTAAAAGTGGTCGGCCATCGCAAACACCGTAACTCCGCTCCGCACTACCCCACACCTCCCTCCTATATATATGCTTCTCCGCCTCACCTTCCAACCCCAATTTCAGCTCCTCCCTCTCACGGGCTCTTCGCTGCCGGAATGCTCACTTTACCTTATTCCCACGTCGACTCCAGTTTGCGTGCTCTTGCCGCCCAAGCTGAAGGCTTTGGTCGATGTGCGATCGGTGGGGTTCATGGTCCCCTTTATCACGTTACAACTTTAGCAGATGATGGACCAGGATCACTCCGCGATGGTTGTCGCAGAAAAGAACCATTGTGGATTGTATTTGAGGTTTCTGGAACTATTCATCTTTCATCTTACTTGAGTGTGTCATCTTACAAGACTATTGATGGCCGAGGTCGAAGGATTAAACTCGCTGGAAAGGGTTTGCGGCTGAAGGAATGTGAACATGTAATAATTTGCAACTTAGAGTTAGAAGGTGGTAGAGGGCCTGATGTGGATGGCATTCAGATCAAGCCTAAGTCAAAGCACATATGGATAGACCGTTGCAGCCTCCGTGATTTTGATGATGGACTGATAGATATTACCCGAGAAAGCACTGATATTACTATTTCTAGATGTCATTTTGCTCAGCATGACAAAACGATGCTTATTGGAGCGGATTCCTTTCACATTGGTGATAGATGCATGAGGGTGACTATTCACCATTGTTTCTTTGATGGAACACGACAGCGACACCCTCGTGTTAGATTTGCAAAAGTGCATCTGTACAATAATTACACCAGAAATTGGGGCATATATGCTGTTTGTGCGAGTGTGGAATCACAGATATACTCACAATGCAACATATATGAAGCAGGGCAAAAGAAAGTAGCATTTAAGTATCTCTCTGAAAAGGCGGGAGACAAGGAGGCAGAAGCAAGTGGGCACATATGGTCTGAAGGAGACTTGTTCATAAGTGGAACTCAGGCAGGCTTAAAGAGTGATAGCATGGGAGCTCCCACATTTCATCCAAGTCAACACTATACAACGTGGACAGTGGCACCTCCTACAGAAGATCTCAAACAGCTTCTTCATCACTACACTGGATGGCAATGTGTTGCACGCCCACCAGATCATCCCCTGCCTGCATAG 1287 0.467 MSSAPLTVTCLPTSKSRAFAETGKDDSSELQFRDMAEADCDWDAAFEVGNSLKVVGHRKHRNSAPHYPTPPSYIYASPPHLPTPISAPPSHGLFAAGMLTLPYSHVDSSLRALAAQAEGFGRCAIGGVHGPLYHVTTLADDGPGSLRDGCRRKEPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGRRIKLAGKGLRLKECEHVIICNLELEGGRGPDVDGIQIKPKSKHIWIDRCSLRDFDDGLIDITRESTDITISRCHFAQHDKTMLIGADSFHIGDRCMRVTIHHCFFDGTRQRHPRVRFAKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKVAFKYLSEKAGDKEAEASGHIWSEGDLFISGTQAGLKSDSMGAPTFHPSQHYTTWTVAPPTEDLKQLLHHYTGWQCVARPPDHPLPA 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1782 428 Gene3D - 103 408 IPR012334 -
Lele14g1782 428 PRINTS Pollen allergen Amb family signature 171 187 IPR018082 -
Lele14g1782 428 PRINTS Pollen allergen Amb family signature 116 133 IPR018082 -
Lele14g1782 428 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Lele14g1782 428 PANTHER PECTATE LYASE 18-RELATED 105 380 IPR045032 GO:0030570
Lele14g1782 428 SUPERFAMILY Pectin lyase-like 116 418 IPR011050 -
Lele14g1782 428 SMART amb_all 163 341 IPR002022 -
Lele14g1782 428 Pfam Pectate lyase 172 334 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1782 Lele-ChrLele14 24751685 24755144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1782 138 427 Polysaccharide Lyase AT3G55140 74.483 1.32e-166 468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g1782 14 24751685 24755144 Lele05g1264 05 7889815 7893118 CCT
Lele14g1782 14 24751685 24755144 Lele06g1129 06 7015490 7018668 CCT
Lele14g1782 14 24751685 24755144 Lele07g1310 07 7932259 7934672 CCT
Lele14g1782 14 24751685 24755144 Lele16g0585 16 3296173 3298771 hybridization