Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1750 ATGTTCTCTCCGACGAAGATTTGGCGTCGCTGGCACCGTAAGATCAATGTCAATCAGAACAGACACGCGGTCGTTTCAGCCATTGCTGCATCCGCAATTCCGCCCCTCGTGATTGCCCGTGGGCACAGAATTGAGTCTGTCCCGGAAATGCCTCTGGTTGTCAGTGATTCTGCTGAAGGTGTTGAGAAAACTAATGAAGCGATCAAAGTGCTGAAGAAGGTTGATGCTTTTCCCGACGCTGAGAAGGCAAAGGACAGCCATGCAATCCGTCCTGGTAAGGAAGCTGGATTCGATTTACGAATCATTTTAAAAGCATCAGAGAAGAAGACTGGGCACTATCTTCCTAGAGCTAAGATGGTTAATTCTGATTTGGCGAGGATCATCGACTCTGATGAGATTCAGTCCGTTGTGATGCCCATCAAGAAAGAAGTCAAGCGGGCACCACTCAAGAAGAACCCGCTCAAGAATCTCAATGCTATGTTGAAACTGAATCCATATGCTAAAACTGCTAAGAGGATGTCACTTCTGGCTGAAGCGCAGTGTGTGAAAGCAAAGAAAGAGAATCTTGATAAGAAGAGGAAGTCAGTCTCTAAGTTTCGTCTGCATGATCTGGAGGAGGCTTCTGCTATAAAGGATGCTGGAAAAGCTTGGTATCAAACCATGGTGTCTGATTCTGATTACACGGAATTCGATAACTTTTCTAAGTGGTTAGCAACACGCCTTCTACGCTCTGCTCACAATGTTGGATCTAAATCTCAACATCCCTTCCTCAGCTTCTTTAGATATGGTTCCCTACTTCCCTACACGATTCCACCACTTTCCACTAGCCAAATGGACAGTTCTGGTTCTGGAAGCTCCGGTGTCTCCGTTGTCTGTGACGACGATTCTTGCTCCTATGGCGATGCTTTTACTTACAACTTCGATGTACTGAAGAAGAATGCCGTGATGGCAATGGCTCCAAAGCCGAGGTTGGATGAATTTCTCATGCGAGGACATCGGTTCCGGTGGAGCGCCGGAGCTAATGAAGCATTCCGGGCTGAAACAGAGACAGCAGGTGGATTTGATTCAGCTCATGCTGCAGCTACCAGCAAGATGAGTAACTTCACAAAGGAAGAGGTTGTGCACATTCTTCGTCAACAGAGCACTGGCTTTGAAAGGGGAAGTTCAAAATACAGGGGAGTTACTCTGCATATATGTGGGCGATGGGAACCTCGCATGGGGCTGTTTCGTGGGAAAAGGGTTCCGGCGACGATGGCAGAAGCTCCGGCCAGTCCAGGCGGTGGCAGCCATGAGAGCGGTGAGCATAGCCCTCGCTCTAATGTCCGCGAGCAGGACAGGTTCCTCCCCATCGCCAACATCAGCCGAATCATGAAAAAGGCACTTCCTGCTAACGGAAAAATAGCCAAGGACGCCAAGGAGACTGTGCAGGAATGTGTTTCAGAGTTCATCAGCTTTATCACCAGCGAGGCGAGTGATAAGTGTCAGAGAGAGAAGAGGAAGACAATTAATGGTGATGATTTGCTTTGGGCGATGGCAACTCTAGGTTTTGAAGATTATATTGACCCCCTGAAAATTTACCTAGCCAGATACAGAGAGGGTGATACCAAGAGTTCTGCAAAGGGTGGAGATGCATCGGCTAAGAAAGATGTTCAACCTAGTCCTACTGCTCAGCTTACCCATCAAGGTTCTTTTCCCCAAGGTGTTAATTACGCAAATTCTCAGGCTCAACATATGATGGTTCCTACGCAGGCTCCAGAGTAG 1761 0.4793 MFSPTKIWRRWHRKINVNQNRHAVVSAIAASAIPPLVIARGHRIESVPEMPLVVSDSAEGVEKTNEAIKVLKKVDAFPDAEKAKDSHAIRPGKEAGFDLRIILKASEKKTGHYLPRAKMVNSDLARIIDSDEIQSVVMPIKKEVKRAPLKKNPLKNLNAMLKLNPYAKTAKRMSLLAEAQCVKAKKENLDKKRKSVSKFRLHDLEEASAIKDAGKAWYQTMVSDSDYTEFDNFSKWLATRLLRSAHNVGSKSQHPFLSFFRYGSLLPYTIPPLSTSQMDSSGSGSSGVSVVCDDDSCSYGDAFTYNFDVLKKNAVMAMAPKPRLDEFLMRGHRFRWSAGANEAFRAETETAGGFDSAHAAATSKMSNFTKEEVVHILRQQSTGFERGSSKYRGVTLHICGRWEPRMGLFRGKRVPATMAEAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLARYREGDTKSSAKGGDASAKKDVQPSPTAQLTHQGSFPQGVNYANSQAQHMMVPTQAPE 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1750 586 Coils Coil 584 586 - -
Lele14g1750 586 SUPERFAMILY Histone-fold 444 544 IPR009072 GO:0046982
Lele14g1750 586 SUPERFAMILY Ribosomal protein L4 1 102 IPR023574 GO:0003735|GO:0005840|GO:0006412
Lele14g1750 586 PANTHER 60S RIBOSOMAL PROTEIN L4 1 94 IPR045240 -
Lele14g1750 586 MobiDBLite consensus disorder prediction 418 441 - -
Lele14g1750 586 Gene3D Histone, subunit A 434 575 IPR009072 GO:0046982
Lele14g1750 586 Gene3D - 1 96 IPR023574 GO:0003735|GO:0005840|GO:0006412
Lele14g1750 586 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 447 511 IPR003958 -
Lele14g1750 586 MobiDBLite consensus disorder prediction 535 572 - -
Lele14g1750 586 PRINTS CCAAT-binding transcription factor subunit A signature 475 493 - -
Lele14g1750 586 PRINTS CCAAT-binding transcription factor subunit A signature 513 531 - -
Lele14g1750 586 PRINTS CCAAT-binding transcription factor subunit A signature 494 512 - -
Lele14g1750 586 Pfam 60S ribosomal protein L4 C-terminal domain 111 180 IPR025755 -
Lele14g1750 586 MobiDBLite consensus disorder prediction 550 572 - -
Lele14g1750 586 ProSitePatterns NF-YB/HAP3 subunit signature. 478 494 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lele14g1750 586 FunFam Nuclear transcription factor Y subunit B-3 436 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1750 Lele-ChrLele14 24580400 24590291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1750 418 581 CCAAT-HAP3 Transcription Factor Family AT2G37060 77.011 2.43e-79 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele14g1750 Ribos_L4_asso_C 3.1e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g1750 14 24580400 24590291 Lele15g0601 15 3535708 3537410 hybridization
Lele14g1750 14 24580400 24590291 Lele16g0615 16 3455740 3457390 hybridization