Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1746 ATGTCACTTAGGGTTTTACACTGCGGCAGCTGCTTCTTCGCCCCAAATTTCCTGAACACTGTAAGCGAGGAGGAACTAACCGCCAACATGGGGAAGACTCGTGGTATGGGAGCTGCCCGCAAGCTGAGATCCCATCGCAGGAGGCAAAGGTGGGCAGACAAAGCATACAAAAAGTCTCACCTTGGGAATGAGTGGAAGAAGCCTTTTGCTGGCTCATCCCATGCAAAGGGTATTGTGCTTGAAAAGATAGGGATTGAGGCTAAGCAGCCCAACTCTGCCATTCGTAAGTGTGCCAGGGTTCAACTCATTAAAAATGGGAAGAAGATCGCTGCATTTGTCCCCAACGATGGTTGCTTAAACTATATCGAAGAGAATGATGAAGTATTGATAGCTGGATTTGGGCGAAAGGGTCACGCCGTGGGTGATATTCCTGGGGTCAGGTTCAAGGTTGTGAAGGTGTCTGGTGTTTCCCTCCTGGCACTCTTCAAGGAGAAGAAGGAGAAGCCCAGGTCTTAA 516 0.4942 MSLRVLHCGSCFFAPNFLNTVSEEELTANMGKTRGMGAARKLRSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1746 171 CDD Ribosomal_S23 55 168 IPR005680 GO:0003735|GO:0006412|GO:0015935
Lele14g1746 171 ProSitePatterns Ribosomal protein S12 signature. 88 95 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lele14g1746 171 FunFam 40S ribosomal protein S23 54 171 - -
Lele14g1746 171 Gene3D - 54 171 IPR012340 -
Lele14g1746 171 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 26 171 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lele14g1746 171 SUPERFAMILY Nucleic acid-binding proteins 49 169 IPR012340 -
Lele14g1746 171 TIGRFAM uS12_E_A: ribosomal protein uS12 35 170 IPR005680 GO:0003735|GO:0006412|GO:0015935
Lele14g1746 171 Pfam Ribosomal protein S12/S23 60 170 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1746 Lele-ChrLele14 24562341 24565199 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1746 30 171 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 95.070 1.37e-95 271