Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1734 ATGCTACTGAATGTCAATGCATTTGTTTCTGGCTTCAATCTTATTCCTGGGGAAGCCTTGAAATTATCCATCTTCGTGAAGACCTTGACCGGCAAGACAATCACCCTCGAGGTGGAAAGCTCCGATACTATTGACAACGTGAAGGCGAAGATTCAAGATAAGGAAGCTATCCCTCCGGATCAGCAGAGGCTCATCTTCGCCGGCAAGCAGTTGGAGGACGGCCGTACTCTCGCCGATTACAACATTCAGAAGGAGTCGACACTTCACCTCGTGCTCCGATTGAGGGGCGGTATGCAGATCTTCGTCAAAACCCTAACCGGAAAGACGATCACTCGAGGTGGAGAGCTCAGACACCATCGATAA 363 0.4986 MLLNVNAFVSGFNLIPGEALKLSIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEAIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITRGGELRHHR 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1734 120 ProSitePatterns Ubiquitin domain signature. 48 73 IPR019954 -
Lele14g1734 120 SMART ubq_7 22 93 IPR000626 GO:0005515
Lele14g1734 120 SUPERFAMILY Ubiquitin-like 21 97 IPR029071 -
Lele14g1734 120 FunFam Polyubiquitin 3 22 97 - -
Lele14g1734 120 ProSiteProfiles Ubiquitin domain profile. 22 97 IPR000626 GO:0005515
Lele14g1734 120 Pfam Ubiquitin family 24 95 IPR000626 GO:0005515
Lele14g1734 120 Gene3D - 18 96 - -
Lele14g1734 120 Gene3D - 97 115 - -
Lele14g1734 120 PANTHER UBIQUITIN 24 110 - -
Lele14g1734 120 PRINTS Ubiquitin signature 32 52 IPR019956 -
Lele14g1734 120 PRINTS Ubiquitin signature 74 95 IPR019956 -
Lele14g1734 120 PRINTS Ubiquitin signature 53 73 IPR019956 -
Lele14g1734 120 CDD Ubl_ubiquitin 22 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1734 Lele-ChrLele14 24517661 24519275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1734 22 119 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 76.923 3.02e-49 151