Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1700 ATGCCTGCAACTCCACTTCCTTCTTCGTTCCTCATCCTCCAACCGCGCTTCAATTTATACTTGAAACCATTATTTTATTCCCTCACCTATCAATCGTCACCTCCATCCCTTGCATTCAATTGCACTGGTAGTTTCTCCATCCGCCGGCCTCCATTTCCGTCGAATACTAGACCCCACTGTGCCCTGTCACAAGCGACACAAGCCGAGTCTCCGAGCGACAATGCGAGTGGCGGTGGCAGGTCAGGCGCGTTATCTACGGGCCCGCTCACTGGAGATGTACAGAAGATCGATGTAAATCCTCCCAAGGGGACGCGGGATTTCCCGCCCGAAGATATGCGCCTGCGCAACTGGCTTTTCAACAATTTCAAAGAGGTTTCACGGCTGCATGGGTTCGAGGAGGTTGATTTTCCGGTGCTTGAGTCAGAGGCGTTGTTCACTAGGAAGGCAGGGGAGGAGATTAAAGACCAGCTTTATTGTTTTGAAGATCGGGGTAATCGTCGTGTTGCATTGAGGCCTGAATTAACACCTTCGTTGGCAAGGCTGGTAATACAGAAAGGAATGACAAGGGGTCGTCGTCGGGAGCACTACCAATGGAATATGGACATTATTGGCGTTCCTGAGGTTATGGCTGAAGCAGAACTCATATCTTCTATTGTCACTCTGTTCAAGCGGATTGGGATCACAGAATCAGATGTTGGATTTAAGGTTTCCAGCCGAAAGGTTCTACAAGAAGTATTGAAGTGTTACTCCATTCGTGAAAATTTGTTTGGCAAGATAGAAAAAGTTCCATTGGATGATATAAAGAAGGAGTTGAAGGCTTCTGGTGTGTCGCAAGAGGCTGTTGAGGAGCTGTTGCAAGTACTTTCCATAAAGTCATTGACAGAGTTGGAAGAATGTGGGTGCATTCCTCTTATGCTTCACATATTGGTTTCAATAAGGTTATTAGTGGAGTTTTCCCCCTATTCTCCTCCAGTTCGACCTTAGAGACTTGGAAGCACTGGAGAAGCAGTTACTGATCTGAAACAGCTGTTTGCACTTGCTGAAAAGTTTGGTTACCATGAATGGCTTCAATTTGATGCGTCAGTTGTTCGTGGCCTTGCTTATTACACTGGCATTGTGTTTGAGGGCTTTGACAGAGAAGGAAAGCTGCGAGCTATTTGTGGTGGGGGCAGATATGACCGGTTATTCTCAACTTTTGGCGCTGATGACATTCCTGCTTGTGGCTTTGGGTTTGGTGATGCAGTCATAGTGGAATTGCTTAGGGAGAAGGGTCTTCTACCTGAGCTCAGCTTGCAGATAGAGAACATAGTGTGTGCCCTGGATGTTGATCTTCAAGGAGCTGCTGCTACGGTTGCTAGGACTCTTAGAGATAAAGGGCAGAGCGTTGACTTGGTTTTGGAGAATAAACCACTTAAATGGGTTTTCAAGCGAGCAAGCCGAATAAATGCTCAGCGGCTGGTATTAGTGGGGAGTTCTGAGTGGCAAAGGGGTATGGCCGGTGTCAAAATCCTCTCTACCGGTGAACATGTTAAACAAATGATGGGACCTACACCACATACTCAACTTGATGCCGAATTAGCTGCAGGGATGGGTATGCCAGATAATGGCCCAAAGCTTATGTCTATGTGA 1629 0.4702 MPATPLPSSFLILQPRFNLYLKPLFYSLTYQSSPPSLAFNCTGSFSIRRPPFPSNTRPHCALSQATQAESPSDNASGGGRSGALSTGPLTGDVQKIDVNPPKGTRDFPPEDMRLRNWLFNNFKEVSRLHGFEEVDFPVLESEALFTRKAGEEIKDQLYCFEDRGNRRVALRPELTPSLARLVIQKGMTRGRRREHYQWNMDIIGVPEVMAEAELISSIVTLFKRIGITESDVGFKVSSRKVLQEVLKCYSIRENLFGKIEKVPLDDIKKELKASGVSQEAVEELLQVLSIKSLTELEECGCIPLMLHILVSIRLLVEFSPYSPPVRPXRLGSTGEAVTDLKQLFALAEKFGYHEWLQFDASVVRGLAYYTGIVFEGFDREGKLRAICGGGRYDRLFSTFGADDIPACGFGFGDAVIVELLREKGLLPELSLQIENIVCALDVDLQGAAATVARTLRDKGQSVDLVLENKPLKWVFKRASRINAQRLVLVGSSEWQRGMAGVKILSTGEHVKQMMGPTPHTQLDAELAAGMGMPDNGPKLMSM 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1700 542 FunFam Histidine--tRNA ligase chloroplastic/mitochondrial 426 515 - -
Lele14g1700 542 Pfam Anticodon binding domain 441 510 IPR004154 -
Lele14g1700 542 SUPERFAMILY Class II aaRS ABD-related 435 510 - -
Lele14g1700 542 PANTHER HISTIDYL-TRNA SYNTHETASE 95 298 IPR004516 GO:0005737
Lele14g1700 542 CDD HisRS-like_core 111 420 IPR041715 -
Lele14g1700 542 MobiDBLite consensus disorder prediction 50 110 - -
Lele14g1700 542 Gene3D Bira Bifunctional Protein; Domain 2 94 424 IPR045864 -
Lele14g1700 542 MobiDBLite consensus disorder prediction 50 83 - -
Lele14g1700 542 Gene3D - 426 517 IPR036621 -
Lele14g1700 542 Pfam Histidyl-tRNA synthetase 271 410 IPR041715 -
Lele14g1700 542 Pfam Histidyl-tRNA synthetase 103 183 IPR041715 -
Lele14g1700 542 SUPERFAMILY Class II aaRS and biotin synthetases 100 424 IPR045864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1700 Lele-ChrLele14 24325491 24334060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1700 510 541 C2H2 Transcription Factor Family AT2G36930 78.125 7.03e-10 57.0