Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1656 ATGAGGCCGCACGGACAAAACAGGAGCAGGATGAATGGGCAGGCAATTTCGAAGGGGAAAGCTTCCTTGGGTACTTTTATGCCACAAGCACAACAGCCTTCTCAGTCAATGGCCTCATCAAAAGAATCAACTGCTCGGCAGAGGACTGGGCAGACTAAGTATGTAGTGAGAGGGCGCCAAGGTGAGATGGAAAAAGGATCTGGAGTCCCATCCTATTGTTCTAACTCTATTGTTGGGAGTCAAGGGTCGAAAATCCTCGATTGCATGCTTGCTGCTGCCACTCCTGAGCAGCAAAACCAACTCCTTGGCGAGCACATTTACCCCCTGATCCAGAAACTCAAGCCTAGCCTGGCAGCGAAGATTACTCGGATGCTCTTGGAGATGGAAATTGGAGAATCGGTGCTTCTCCTGGAATCTCCAAGGTCTTTCTTTGCCAAGGTGGAAGAAGCTGTGCAGGTGCTTAAGAACTCCGAGACTAAAGTGTTGGACCAGGATGCACTTCATCCAAGTTACTTTTCAGCTGAGGTTGCTGTGAACTGA 540 0.4944 MRPHGQNRSRMNGQAISKGKASLGTFMPQAQQPSQSMASSKESTARQRTGQTKYVVRGRQGEMEKGSGVPSYCSNSIVGSQGSKILDCMLAAATPEQQNQLLGEHIYPLIQKLKPSLAAKITRMLLEMEIGESVLLLESPRSFFAKVEEAVQVLKNSETKVLDQDALHPSYFSAEVAVN 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1656 179 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 82 159 IPR002004 GO:0003723
Lele14g1656 179 Pfam Poly-adenylate binding protein, unique domain 89 154 IPR002004 GO:0003723
Lele14g1656 179 SMART poly_2 94 157 IPR002004 GO:0003723
Lele14g1656 179 Gene3D - 81 170 - -
Lele14g1656 179 SUPERFAMILY PABC (PABP) domain 74 159 IPR036053 GO:0003723
Lele14g1656 179 MobiDBLite consensus disorder prediction 1 54 - -
Lele14g1656 179 MobiDBLite consensus disorder prediction 1 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1656 Lele-ChrLele14 24060404 24061157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1656 86 156 Eukaryotic Initiation Factors Gene Family AT1G49760 53.521 7.20e-17 75.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1000 06 6203040 6207861 Lele14g1656 14 24060404 24061157 CCT
Lele07g1180 07 7125059 7129507 Lele14g1656 14 24060404 24061157 CCT
Lele08g0987 08 6263255 6267838 Lele14g1656 14 24060404 24061157 CCT
Lele05g1136 05 7091145 7094812 Lele14g1656 14 24060404 24061157 CCT
Lele14g1656 14 24060404 24061157 Lele15g0703 15 4046444 4063908 hybridization
Lele14g1656 14 24060404 24061157 Lele16g0706 16 3978064 3982239 hybridization