LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele14g1604	ATGGGTGTCCGGGAAGGTGAGACGACGCACTCGCAAGGCGAGGTGGAATCAGGGCACAAGAACAGCCACCCATTCTCGTCGCTCGGAAGACAATCGTCGATATATTCTCTCACGCTCGACGAGTTTCAGCACACGCTATGCGAGAGCGGCAAGAATTTTGGGTCTATGAACATGGATGAGTTTCTGAGCAGCATCTGGAACGCTGAGGAGAGCCAAGCCATTAACTCGAGCATTAACATGAACACCAACGACAACGCAGGCTTGGCTCTGAATGAAGCAACCGCTGAAAAAGGAGTGATCAGGAAGCAGCCAAGCCTTGCTCGTCAAGGCTCTCTGACGCTGCCGGCGCCGCTCTGTAGAAAGACGGTGGATGAAGTTTGGTCTGAGATACATAGAGGACAGCAGGGTCATCAAAGCAGTCGCGGTGGCGCCAATGGCAATGTGCAGAATACCGAATCTGCCTCTCGCCAGCCTACTTTTGGTGAGATGACTCTCGAGGATTTCTTGATCAAAGCAGGGGTGGTTCAGAAGTCCTGTACTGTTGCAATGCCCGCCCAAGTCCCAGGCCAAGCCTCAACGCAGCAGCAGCCGCAACCCCCGCCGTATGGGATGTACCCGAATAACAACTCTTCAATGGGACCCTCTTTTGTTGGTAGGCCCGTATTGGCGGGCAATGTGGTGCCACCGTACCGGGCCGTGGCTCAAGGAGATCCTTCTTCTGGGTACGCCGGGAATGGGAAGAGGGATAATGGGTATCCTCCGCCACCACCGTTGTCGGGGGTTTGCTACGGAGATAGGGTGCTGAATGGAGGCAGTGGGTATGGGGCGGCGGCGCCGACTATGGGAATAGGGGCGCCGTTGAGCCCGGTTTCGCCAGATGGGCTGGGAACAAATGAGAACTGTGGTGGTCAGTTTGGGGTAGAGATGGGGATGTTACGGGGAAGGAAGAGGATCATCGATGGTCCGGTGGAGAAGGTGGTGGAGAGAAGGCAGAGGAGGATGATCAAGAACAGAGAGTCGGCGGCGAGATCCAGAGCCAGAAAACAGGCATATACGGTTGAATTAGAAGCAGAACTGAATCAATTAAGAGAAGAGAACGCCCATCTGAAACTGGCGATGGCCCAGCTTGAGAGGAGAAGAAAGCAACAGAGTCTTGAGGAAGCGAACATGAGAGTTCCTACCAAAGCTCAGAAGGCAAGAGAGAAATTGAGGTCTTTGATGAGGATTGTGAGCTGTCCTTTGTGA	1245	0.5406	MGVREGETTHSQGEVESGHKNSHPFSSLGRQSSIYSLTLDEFQHTLCESGKNFGSMNMDEFLSSIWNAEESQAINSSINMNTNDNAGLALNEATAEKGVIRKQPSLARQGSLTLPAPLCRKTVDEVWSEIHRGQQGHQSSRGGANGNVQNTESASRQPTFGEMTLEDFLIKAGVVQKSCTVAMPAQVPGQASTQQQPQPPPYGMYPNNNSSMGPSFVGRPVLAGNVVPPYRAVAQGDPSSGYAGNGKRDNGYPPPPPLSGVCYGDRVLNGGSGYGAAAPTMGIGAPLSPVSPDGLGTNENCGGQFGVEMGMLRGRKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLREENAHLKLAMAQLERRRKQQSLEEANMRVPTKAQKAREKLRSLMRIVSCPL	414

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele14g1604	414	PANTHER	CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED	29	382	IPR043452	GO:0003700\|GO:0045893
	Lele14g1604	414	FunFam	protein ABSCISIC ACID-INSENSITIVE 5 isoform X1	327	383	-	-
	Lele14g1604	414	MobiDBLite	consensus disorder prediction	130	159	-	-
	Lele14g1604	414	MobiDBLite	consensus disorder prediction	1	27	-	-
	Lele14g1604	414	Gene3D	-	327	384	-	-
	Lele14g1604	414	MobiDBLite	consensus disorder prediction	132	159	-	-
	Lele14g1604	414	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	327	379	IPR004827	GO:0003700\|GO:0006355
	Lele14g1604	414	MobiDBLite	consensus disorder prediction	1	17	-	-
	Lele14g1604	414	MobiDBLite	consensus disorder prediction	380	399	-	-
	Lele14g1604	414	CDD	bZIP_plant_BZIP46	329	383	-	-
	Lele14g1604	414	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	332	347	IPR004827	GO:0003700\|GO:0006355
	Lele14g1604	414	Coils	Coil	345	391	-	-
	Lele14g1604	414	SUPERFAMILY	Leucine zipper domain	329	379	IPR046347	GO:0003700\|GO:0006355
	Lele14g1604	414	MobiDBLite	consensus disorder prediction	186	210	-	-
	Lele14g1604	414	MobiDBLite	consensus disorder prediction	232	257	-	-
	Lele14g1604	414	Pfam	bZIP transcription factor	329	381	IPR004827	GO:0003700\|GO:0006355
	Lele14g1604	414	SMART	brlzneu	325	391	IPR004827	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele14g1604	Lele-ChrLele14	23766770	23768610	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele14g1604	22	383	bZIP Transcription Factor Family	AT2G36270	53.041	1.24e-110	330

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Lele14g1604		bZIP_1	2.4e-10	CL0018

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele07g1112	07	6698629	6706636	Lele14g1604	14	23766770	23768610	CCT
	Lele05g1075	05	6662361	6663683	Lele14g1604	14	23766770	23768610	CCT
	Lele14g1604	14	23766770	23768610	Lele15g0753	15	4344651	4346404	hybridization
	Lele14g1604	14	23766770	23768610	Lele16g0760	16	4286255	4288086	hybridization