Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1579 ATGAAAGATGTAGAGGTGTACCTTGGAGAACGCCATTTTGGAGTTGCGTGTTGGACGATCTGGAAAAATCGCATTGTGACTAAAGCTAAGGGTTCTGTTCATAAGCTTACTGCGGCTGAAGAGGAGGACCCTAGAAACCCTAGTATTCATGATATAAATCATTTCGCATTCCATTCCCACCGGATTTATCATACTGCGGAGGCAAATAGAGGGGTGACTGAGAGAGAGGCTACGATGCAAATTTTCGTCAAAACCCTAACAGGGAAGACCATAACTCTCGAGGTCGAGAGCAGCGACACTATTGACAATGTTAAGGCTAAGATTCAAGACAAGGAAGGCATCCCACCGGATCAGCAGCGTTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGCAGAACTTTGGCTGATTACAACATTCAGAAGGAATCCACACTTCATCTTGTACTGAGGCTTCGTGGCGGTATCATAGAGCCTTCTTTGATGGCTCTGGCTCGCAAATACAATCAAGACAAGATGATCTGCCGCAAATGCTATGCTCGTCTGCACCCAAGGGCTGTCAACTGCAGGAAAAAGAAGTGTGGCCACAGTAATCAGCTGAGGCCAAAGAAGAAGATCAAGTAA 621 0.4573 MKDVEVYLGERHFGVACWTIWKNRIVTKAKGSVHKLTAAEEEDPRNPSIHDINHFAFHSHRIYHTAEANRGVTEREATMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1579 206 FunFam Ubiquitin-60S ribosomal L40 fusion 79 156 - -
Lele14g1579 206 CDD Ubl_ubiquitin 79 154 - -
Lele14g1579 206 ProSitePatterns Ubiquitin domain signature. 105 130 IPR019954 -
Lele14g1579 206 PANTHER UBIQUITIN 79 165 - -
Lele14g1579 206 Gene3D - 72 157 - -
Lele14g1579 206 Pfam Ribosomal L40e family 156 205 IPR001975 GO:0003735|GO:0005840|GO:0006412
Lele14g1579 206 SUPERFAMILY Ubiquitin-like 74 154 IPR029071 -
Lele14g1579 206 SMART Ribosomal_L40e_3 155 206 IPR001975 GO:0003735|GO:0005840|GO:0006412
Lele14g1579 206 FunFam ubiquitin-60S ribosomal protein L40 157 206 - -
Lele14g1579 206 SUPERFAMILY Zn-binding ribosomal proteins 154 205 IPR011332 GO:0006412
Lele14g1579 206 ProSiteProfiles Ubiquitin domain profile. 79 154 IPR000626 GO:0005515
Lele14g1579 206 PRINTS Ubiquitin signature 89 109 IPR019956 -
Lele14g1579 206 PRINTS Ubiquitin signature 110 130 IPR019956 -
Lele14g1579 206 PRINTS Ubiquitin signature 131 152 IPR019956 -
Lele14g1579 206 SMART ubq_7 79 150 IPR000626 GO:0005515
Lele14g1579 206 Pfam Ubiquitin family 81 152 IPR000626 GO:0005515
Lele14g1579 206 Gene3D - 158 206 IPR038587 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1579 Lele-ChrLele14 23649288 23651708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1579 79 206 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 99.219 3.90e-92 263