LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele14g1568	ATGGGTCGCGTCCGCACCAAGACTGTCAAGAAGTCTTCACGTCAGGTCATCGAGAAGTACTACTCTCGAATGACATTGGATTTCCATACCAACAAGAAGATTCTTGAGGAAGTTGCTCTCATTCCGTCCAAGAGACTCCGCAACAAGATTGCCGGATTCTCGACTCATCTCATGAAGAGGATTCAGAAGGGACCTGTTCGTGGAATTTCTCTCAAGCTTCAGGAGGAGGAGCGTGAGCGTCGCATGGATTTCGTCCCTGACGTCTCCGCCATTAAGACCGATCAGATCGAGGTCGATAAGGAGACTCTAGACATGCTTAATGCTCTTGGTATGAATGATATTCCGGGGCTTGTCCAAGTTGATCCCGTCCCTGTGCAGCAGACGTTGGGATTCGGTCGTGGTTTTGGCGGACCTAGGAGGTATTAG	426	0.5	MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVALIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLNALGMNDIPGLVQVDPVPVQQTLGFGRGFGGPRRY	141

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele14g1568	141	Pfam	Ribosomal S17	1	120	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Lele14g1568	141	FunFam	40S ribosomal protein S17	1	62	-	-
	Lele14g1568	141	Gene3D	-	1	62	IPR036401	GO:0003735\|GO:0005840\|GO:0006412
	Lele14g1568	141	ProSitePatterns	Ribosomal protein S17e signature.	41	56	IPR018273	GO:0003735\|GO:0005840\|GO:0006412
	Lele14g1568	141	PANTHER	40S RIBOSOMAL PROTEIN S17	1	125	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Lele14g1568	141	Hamap	30S ribosomal protein S17e [rps17e].	1	63	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Lele14g1568	141	SUPERFAMILY	Rps17e-like	1	62	IPR036401	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele14g1568	Lele-ChrLele14	23597211	23597636	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele14g1568	1	141	Cytoplasmic Ribosomal Protein Gene Family	AT5G04800	81.944	8.01e-81	233

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele14g1568	14	23597211	23597636	Lele15g0782	15	4490636	4491537	hybridization
	Lele14g1568	14	23597211	23597636	Lele16g0793	16	4462957	4464461	hybridization