LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele14g1557	ATGTCTGGCGCCATTGGAGCTTCAAACCCACAGGCATCGCCATCAACTGACACTCCTCAGAATCGGCCGCCACTAAAGCGTCACCTGACCTTCGCATCGACTAAACCGCCATTTGTTCCTCCGGATGATTATCACAGCTTTTCGTCTCCCAACTCTAGAAGGGCTGCCGATCAAGAACCTGAAGCTGTTGTTGTTCGATCTCCGTATATGAAGCAGAAGAGCATAGTGAGTGACAACAATGGAGAGTCCCAGGAATGGAGTAATAGCCCAGTTACTAATGTAACAAGTAGTCCCCTCAAAACACCCATGTCTGCAAAAGGTGGAAGGACATACAATAAGTCCAAGGTTGCCAAAGAAGGCAAATCTGGTCCTCAGACCCCCATCTCAAATGCTGGTTCCCCTTTTCTAACTCCTGCTGGCAGCTGTCGTTATGACAGTTCCTTGGGTTTGTTGACTAAAAAGTTTATCAATTTGCTCAAGCAAGCAGAGGATGGTGATCTTGACCTAAACAAAGCGGCTGAAACTTTGGAGGTGCAAAAGAGGAGGATATATGACATAACCAATGTTTTGGAAGGAATTGGTCTCATTGAGAAAAAGCTCAAAAATAGAATACATTGGAAGGGAATCAAATCTTCTACATCTGGAGAGGATGATGGTGATGTATCTATACTGAAGGCAGATGTTGATAAGCTTTCTTTGGAAGAGCAAAATTTAGATGATCAAATAAGGGGAATGCAGGAAAGGCTGAGAAATTTGAGCGAAGATGAAAAGAACCAGAAGTGGCTTTTTGTAACTGAAGAAGATATCAAGGGCCTACCCGGCTTGCAGCAGAATGAAACTCTAATTGCAATTAAAGCCCCGCATGGAACCACCTTGGAGGTCCCTGATCCTGAGGAAGCCGTTGACTATCCACAGAGGAGATACAGAATAATTCTTAGAAGCACAATGGGTCCCATTGATGTGTACCTTGTCAGTCAATTTGAGGAGAAATTCGAAGAGATGAATGGCGTTGAGCCCCCTGCAAGCCTCCCACTTGCTTCAAGTTCAGGGTCCAATGAACACCTAACGACAGAAATGACCCCACTTGAACACAATGGAAAGGGTCTTGAATCTCAAACTCAACCTTCTTCGTATACATGCTCTGATCTAAATGCTTCACCAGAGTTCGGTGGTGGCATTATGAAAATTGTTCCTTCTGATGTTGATAATGATGCAGATTACTGGCTACTATCAGATGCTGACGTTAGCATTACCGATATGTGGAGAACAGATTCAAGTGTTGATTGGAATGGGGTGGACATTCTTCCGTCTGATTTCGGAGTCATCTCAAGGCCACAAACTCCATCATCTGGGTTTGCTGATGGACCATCCACATTAACTAACTCTAATCAGAGTAGACGCCATATTCATTACCTTATCTCATGA	1425	0.4414	MSGAIGASNPQASPSTDTPQNRPPLKRHLTFASTKPPFVPPDDYHSFSSPNSRRAADQEPEAVVVRSPYMKQKSIVSDNNGESQEWSNSPVTNVTSSPLKTPMSAKGGRTYNKSKVAKEGKSGPQTPISNAGSPFLTPAGSCRYDSSLGLLTKKFINLLKQAEDGDLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGIKSSTSGEDDGDVSILKADVDKLSLEEQNLDDQIRGMQERLRNLSEDEKNQKWLFVTEEDIKGLPGLQQNETLIAIKAPHGTTLEVPDPEEAVDYPQRRYRIILRSTMGPIDVYLVSQFEEKFEEMNGVEPPASLPLASSSGSNEHLTTEMTPLEHNGKGLESQTQPSSYTCSDLNASPEFGGGIMKIVPSDVDNDADYWLLSDADVSITDMWRTDSSVDWNGVDILPSDFGVISRPQTPSSGFADGPSTLTNSNQSRRHIHYLIS	474

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele14g1557	474	Gene3D	-	218	326	-	-
	Lele14g1557	474	PANTHER	TRANSCRIPTION FACTOR E2F	78	426	IPR015633	GO:0000978\|GO:0006357
	Lele14g1557	474	MobiDBLite	consensus disorder prediction	1	136	-	-
	Lele14g1557	474	MobiDBLite	consensus disorder prediction	342	356	-	-
	Lele14g1557	474	MobiDBLite	consensus disorder prediction	72	103	-	-
	Lele14g1557	474	Pfam	E2F transcription factor CC-MB domain	224	325	IPR032198	GO:0046983
	Lele14g1557	474	MobiDBLite	consensus disorder prediction	1	23	-	-
	Lele14g1557	474	Gene3D	-	137	210	IPR036388	-
	Lele14g1557	474	SUPERFAMILY	"Winged helix" DNA-binding domain	143	206	IPR036390	-
	Lele14g1557	474	Pfam	E2F/DP family winged-helix DNA-binding domain	145	208	IPR003316	GO:0005667\|GO:0006355
	Lele14g1557	474	SMART	E2F_TDP_2	143	208	IPR003316	GO:0005667\|GO:0006355
	Lele14g1557	474	Coils	Coil	228	255	-	-
	Lele14g1557	474	CDD	E2F_DD	221	326	IPR032198	GO:0046983
	Lele14g1557	474	SUPERFAMILY	E2F-DP heterodimerization region	221	326	IPR037241	-
	Lele14g1557	474	MobiDBLite	consensus disorder prediction	337	356	-	-
	Lele14g1557	474	FunFam	E2F transcription factor 1	137	210	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele14g1557	Lele-ChrLele14	23541945	23546499	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele14g1557	23	462	E2F-DP Transcription Factor Family	AT2G36010	59.570	6.01e-171	488

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	E2F-DP	Lele14g1557		E2F_CC-MB	4.9e-32	No_clan