LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele14g1541	ATGGCGACGTACTTTCATGGTAATCCTGAAATCCAACCACCCGATGGCCTCCAAACTCTGGTTCTCATGAACCCTGGCTACATCCACTATTCCGACACGCCCCCACCTCCGCCTCCGCCGCCTCACCCCAACAACTTGGTCTTCCTCAACTCCGTCGCGGCTAGTAACAACTCGCTTACTCCCCAAAAGCTCCACCACGTGCAGCCCAATCACACCCAGCAATTCGTGGGCATCCCTCTGCCGACCGTCGCGCCCGCCTCCTCCCAGGACCCCAACCAGCAGCACTCCTCCGTGCACGCTCATCAAGATGGTTCCACCTTGCATGGATTTGTGCCTCTCATGCCGTGCAATCTATGGAACCCAATCGACACAAACGCGACGGCTCGTGAGACTCCACGAGCACAGCAGGGATTGTCGCTGAGCCTGTCCTCCCAGCAAGTTGGAATGGGGTCTTTCCGTGTTGATCGTGACGTGACATCGCAGGGTCAAGCGCCTGCTATGTCTGGCGAAGACGTTCGCGGATCGGGTGGGTCGCCGCCTTCGGCTTCTGGGGTGACCAACGTGAACGGTGTTTCGGGGATTCAGAGCGTGCTTCTGAGCTCCAAGTACTTGAAATCAGCACAGGAACTTCTCGACGAGGCCGTCAACGTTAACAACGGCATCAAGACCGAACTGGGAAAGAAGAGCGGTGGGGCCTATACCAAAGCCACTGGGGAGACATCAGGAACAGCTGCTAGTGGCGACGGCTCTGTCGGCGGAGAAGGAAACGCTAAGCGTGCCTCTGAGCTATCAGCTGCGGAGAGACAGGAAATTCAGATGAAGAAAGCTAAGCTAATCAGCATGCTCGATGAGGTGGAGCAGAGGTACAGGCAGTACCACCAACAGATGCAGATAGTGATTTCGTCATTCGAGCAAGCTGTGGGAATTGGATCGGCCAGAACATACACAGCCCTTGCGCTGCAGACAATCTCCAAGCAGTTTCGCTGCTTGAAGCATGCCATAACAGCCCAAATTCGAGCTGCTAATAAGAGCTTAGGAGAAGAAGATTGCTTTGGAACCAAGATTGAAGGTTCGAGGCTCAAGTACGTGGACCATCCCCTGCGCCAACAGCGAGCTCTCCAACAGTTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCTGTCTCTGTTCTTCGTGCTTGGCTCTTTGAGCACTTCCTCCACCCTTATCCCAATGATTCTGACAAGCATATGCTTGTTAAGCAAACAGGCCTCACTAGGAGCCAGGTTTCGAATTGGTTCATAAATGCTCGGGTTCGGCTCTGGAAACCAATGGTGGAAAAAATGTACACGGAGGAGATGAAGGAGCAAGAACAGAATGGGTCTGAAGATAAATCAAGCAAGAGCGGTGAAGATCCTGCTATTAAAACCGATGCTCCACAACAAAGAGGCCCTGCCACTGAAACGGACGCTAGAAGCCTCGACTCCAACCAAGACACGCCTTCAAACCACAATAACAGTCCTACGGTTTCAGTTTCTAAACCATTGATATCATCACCGACTGGGGATAATAATGGCAGAAACCAGTTTGGGTTCAGTTTCATGGGATCATCAGAGCTAGAAGGGATCACGCAAGCAAGTCCCAAGAAACCAAGAAACCAAGAAATTCTACACTTCCCAACTTCAATTAACATGGGCGTGAAGCCCAGTGAAGCCAATAATGAGCAACTTGCAATAAAATTCGGAGATGATGAGAGGCAGGGGAGGGATGGATACTCGTTCCTGGGAACCCAATCAAACTTCATCGGAGGTTTTGGACAATACCCAGTCGGGGAATTTGGAAGGTTTGACGCAGAACAGTTTACTCCAAGGTTTTCCGGTAATGGGGTTTCCCTGACTCTTGGTCTTCCCCACTGTGACACATTGTCAGGAAGCCATCAAACTTTTCTCCCAAACCAGAACATTCGGTTGGGAAGAAGACTGGAGATGGGTGAATCAAACGAGTATGGAGCCATAAACCCTTCCACTACTCACTCATCAGCTGCATTTGAGAACATGAACATGCAAAACCCAAAGAGGTTTGCTGCACAGTTGTTGCCGGACTTTGTCACCTAA	2115	0.5135	MATYFHGNPEIQPPDGLQTLVLMNPGYIHYSDTPPPPPPPPHPNNLVFLNSVAASNNSLTPQKLHHVQPNHTQQFVGIPLPTVAPASSQDPNQQHSSVHAHQDGSTLHGFVPLMPCNLWNPIDTNATARETPRAQQGLSLSLSSQQVGMGSFRVDRDVTSQGQAPAMSGEDVRGSGGSPPSASGVTNVNGVSGIQSVLLSSKYLKSAQELLDEAVNVNNGIKTELGKKSGGAYTKATGETSGTAASGDGSVGGEGNAKRASELSAAERQEIQMKKAKLISMLDEVEQRYRQYHQQMQIVISSFEQAVGIGSARTYTALALQTISKQFRCLKHAITAQIRAANKSLGEEDCFGTKIEGSRLKYVDHPLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPNDSDKHMLVKQTGLTRSQVSNWFINARVRLWKPMVEKMYTEEMKEQEQNGSEDKSSKSGEDPAIKTDAPQQRGPATETDARSLDSNQDTPSNHNNSPTVSVSKPLISSPTGDNNGRNQFGFSFMGSSELEGITQASPKKPRNQEILHFPTSINMGVKPSEANNEQLAIKFGDDERQGRDGYSFLGTQSNFIGGFGQYPVGEFGRFDAEQFTPRFSGNGVSLTLGLPHCDTLSGSHQTFLPNQNIRLGRRLEMGESNEYGAINPSTTHSSAAFENMNMQNPKRFAAQLLPDFVT	704

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele14g1541	704	ProSiteProfiles	'Homeobox' domain profile.	381	444	IPR001356	GO:0003677
	Lele14g1541	704	MobiDBLite	consensus disorder prediction	226	265	-	-
	Lele14g1541	704	SUPERFAMILY	Homeodomain-like	385	451	IPR009057	-
	Lele14g1541	704	MobiDBLite	consensus disorder prediction	158	187	-	-
	Lele14g1541	704	MobiDBLite	consensus disorder prediction	454	472	-	-
	Lele14g1541	704	Pfam	Associated with HOX	197	335	IPR006563	-
	Lele14g1541	704	Pfam	Homeobox KN domain	401	440	IPR008422	GO:0003677\|GO:0006355
	Lele14g1541	704	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	90	467	-	-
	Lele14g1541	704	MobiDBLite	consensus disorder prediction	454	534	-	-
	Lele14g1541	704	SMART	HOX_1	384	448	IPR001356	GO:0003677
	Lele14g1541	704	MobiDBLite	consensus disorder prediction	85	103	-	-
	Lele14g1541	704	SMART	prehox3	192	336	IPR006563	-
	Lele14g1541	704	Coils	Coil	268	295	-	-
	Lele14g1541	704	CDD	homeodomain	384	445	IPR001356	GO:0003677
	Lele14g1541	704	MobiDBLite	consensus disorder prediction	84	106	-	-
	Lele14g1541	704	MobiDBLite	consensus disorder prediction	482	534	-	-
	Lele14g1541	704	FunFam	BEL1-like homeodomain protein 9	387	449	-	-
	Lele14g1541	704	Gene3D	-	387	466	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele14g1541	Lele-ChrLele14	23443811	23446415	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele14g1541	1	703	Homeobox Transcription Factor Family	AT2G35940	48.370	1.01e-173	511

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-BELL	Lele14g1541		POX	6.6e-48	No_clan