Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1539 ATGGAAAGAATGATTTGCCAACGCAAGCTAAGCTTAGCCAAGCTTGCGTTAATTATGAAGTATTTGAAGTATGATAGAACGACTTCACTCATGAGGAGAAACTACAAATTAAACCTAGCAGCCAGTGAAGTTGCAAGGAAGAAGGGATCAGATATCAAGATATCTTATCTTACTCTTTCCTACTCAGCAGCTGTAACATACAGGAGTTTCATCTATGGGGAAACTGTTTGTGTAAATGTGGAAATTAATAAGAGGTGGCCTTTGCTTCCCAAATTACCCTCATCACCACCACTTGATCACGCCACGTATGCAGAACACCGACATCGTGTATTCAGAGCTGTGACACACGGCTGGCCAACTTACCCTCATGCATCGTCATGTGCTTATGGCTTGAAAGCAGTAGACACTTCCAAGATTAGCTCTCATATCATGCAGAAAGTAGAGGAAGCAACAATCATGGAGAGTAGTGGGTGGAAGCCTAATGTAGAGATATCACCGAACTGTCCCAGATGTGGGTCTTGCAACACCAAGTTCTGCTACTACAATAACTACAGCTTAACTCAACCTCGCTACTTCTGCAGAGGCTGCAGAAGGTACTGGACCAAAGGAGGATCACTCCGCAATGTTCCCGTCGGCGGCGCCTGCCGTAAGAACAGACGTGGCAGTAAGAACTCCTTCAGACAATCATCAATGGATGCTCCTCCTCCCAAGATTTCACCTCATGGAGATAATTGCAACCCCGCGATAAATCCATATTCATGTAGCTCCTCAGGTGTGCCTGATGCCCCAAATATCGATCTTGCACTCGTTTATGCGAATTTCCTCAATCAAAAGTCAGATTCATCAAGAGGACCAAGCACAGAAGTTGTGGGTTGGGCATCGGAAGATGATCAACTTGGAGTAAGTGGGTGTTTGACAGAATCCCAATTGAGTGAGAGTAACCAAATGTACCTGTATGGGTTCAACTCTATGCAGAAAAATCAGCAAGATCATGGAATTGATCAGCGTTGTAGCAGCAGTAGTAGTCATGAATATGCTATGAATTTCGAGTTGCCGCCATTGCCAGGTGAAGATCAGACGGCGATGCATGATATGATGTGGTCCAATTCTGGCTTGCACTCCTCGCAGCTCCCTCTTTTTGGTGCTGATGCTCATGGTGCCGACTTCTTATGGGATAATTGGAGCCACTTCGATTTATCCAGTCCTTGA 1209 0.4516 MERMICQRKLSLAKLALIMKYLKYDRTTSLMRRNYKLNLAASEVARKKGSDIKISYLTLSYSAAVTYRSFIYGETVCVNVEINKRWPLLPKLPSSPPLDHATYAEHRHRVFRAVTHGWPTYPHASSCAYGLKAVDTSKISSHIMQKVEEATIMESSGWKPNVEISPNCPRCGSCNTKFCYYNNYSLTQPRYFCRGCRRYWTKGGSLRNVPVGGACRKNRRGSKNSFRQSSMDAPPPKISPHGDNCNPAINPYSCSSSGVPDAPNIDLALVYANFLNQKSDSSRGPSTEVVGWASEDDQLGVSGCLTESQLSESNQMYLYGFNSMQKNQQDHGIDQRCSSSSSHEYAMNFELPPLPGEDQTAMHDMMWSNSGLHSSQLPLFGADAHGADFLWDNWSHFDLSSP 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1539 402 Pfam Dof domain, zinc finger 167 220 IPR003851 GO:0003677|GO:0006355
Lele14g1539 402 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 158 189 IPR017896 -
Lele14g1539 402 ProSitePatterns Zinc finger Dof-type signature. 168 204 IPR003851 GO:0003677|GO:0006355
Lele14g1539 402 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 159 338 IPR045174 GO:0003700|GO:0006355
Lele14g1539 402 MobiDBLite consensus disorder prediction 215 239 - -
Lele14g1539 402 ProSiteProfiles Zinc finger Dof-type profile. 166 220 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1539 Lele-ChrLele14 23429152 23431023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1539 135 401 C2C2-Dof Transcription Factor Family AT3G52440 37.847 2.16e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele14g1539 zf-Dof 1e-29 No_clan