Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1534 ATGAGTACAGGTACTCACAAGATTCAGAAGGCCATGCAAACTGCTTATTTCAAAGAACATGAAGGACTTGTCCACAATTCCATTGGGCAATTGTCATCTGTAACCTCAGCCCCCTGGTGGACTTCCCTTGGATCTCAGACAGTTCAACATGAGTCTTTTGGCCAAATGAAACCTTTTTCACTGGACTCCCCCAACTATGTTGACCATCTTACTGGCCCAAAGCAGCCAGGAAGAGCAGCTCATCAGGCTTTGGATAAAGGACACACAACACAGTTCACTATCTTCCCAGTAGATATTGCAATGCGTCAAGAGGAGGCTTTGAGGAAAACATCAACTACAAAGGCCACAACGATCTGCTCAAAATATCCTTATATTGATCGATTTTATGGGCTCATCTCAGCCTATGGACCTCAGATTCCGGGCCGTTTAATGCTGCCACTTAACTTAACATCCGACGATGGGCCAATTTATGTAAATGCTAAGCAGTATCATGGGATCATCAGACGTCGGCAGTCACGTGCAAAGGCTTTACTTGAGAATAAATTCACAAAACGCCGCAGGCCCTATATGCATGAATCACGTCACCTGCATGCGATGAGGCGACCAAGAGGATGCGGTGGTCGCTTCTTGAACACAAGAAATCTGAAGCATGGGAATGTTGAAAGCGGAAGCGAAGTGATCAAAACTGGGGAGGGTCTGTTCCAGTCTAGTGGTTCTCAGAGTTCTGAAGTTCTGCAATCAGAGGGTAATGGAACTCTGAATTCATCAAAGGAAACCATTAGCAGCAGTTCAAATGTTTCAGGGTTCGATGTGACTAGCATGTATGCCGCACGTGGAACTTTCGATAGCTTTGGTCTCAATCATGTGGGGCCCTCTGTGCACTCTCTTGCAGACATGATAGATCATAGTGGACGTGGCATTGCCATGCCTGCAAAATGGGTTGCAGCAGCAGGTGAGCCGTCTTTGGCTCATTCCATGTACTGTACTACTGTCCCGGTCTTTCTGAACAGACATGTCTTGGCACGGTTGGGCGTGTCAATGACTTGA 1047 0.467 MSTGTHKIQKAMQTAYFKEHEGLVHNSIGQLSSVTSAPWWTSLGSQTVQHESFGQMKPFSLDSPNYVDHLTGPKQPGRAAHQALDKGHTTQFTIFPVDIAMRQEEALRKTSTTKATTICSKYPYIDRFYGLISAYGPQIPGRLMLPLNLTSDDGPIYVNAKQYHGIIRRRQSRAKALLENKFTKRRRPYMHESRHLHAMRRPRGCGGRFLNTRNLKHGNVESGSEVIKTGEGLFQSSGSQSSEVLQSEGNGTLNSSKETISSSSNVSGFDVTSMYAARGTFDSFGLNHVGPSVHSLADMIDHSGRGIAMPAKWVAAAGEPSLAHSMYCTTVPVFLNRHVLARLGVSMT 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1534 348 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 155 209 IPR001289 GO:0003700|GO:0006355
Lele14g1534 348 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 73 272 IPR001289 GO:0003700|GO:0006355
Lele14g1534 348 SMART cbf3 151 212 IPR001289 GO:0003700|GO:0006355
Lele14g1534 348 ProSiteProfiles NF-YA/HAP2 family profile. 152 212 IPR001289 GO:0003700|GO:0006355
Lele14g1534 348 PRINTS CCAAT-binding transcription factor subunit B signature 155 177 IPR001289 GO:0003700|GO:0006355
Lele14g1534 348 PRINTS CCAAT-binding transcription factor subunit B signature 186 209 IPR001289 GO:0003700|GO:0006355
Lele14g1534 348 MobiDBLite consensus disorder prediction 235 262 - -
Lele14g1534 348 Gene3D - 153 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1534 Lele-ChrLele14 23400950 23404091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1534 8 318 CCAAT-HAP2 Transcription Factor Family AT3G05690 40.476 9.55e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lele14g1534 CBFB_NFYA 1.8e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0858 06 5338083 5339472 Lele14g1534 14 23400950 23404091 CCT
Lele07g1036 07 6241805 6243300 Lele14g1534 14 23400950 23404091 CCT
Lele08g0848 08 5340814 5346927 Lele14g1534 14 23400950 23404091 CCT
Lele14g1534 14 23400950 23404091 Lele15g0815 15 4713068 4718904 hybridization
Lele14g1534 14 23400950 23404091 Lele16g0835 16 4669477 4672659 hybridization