Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1509 ATGAGCTTCTGGATGGAGAATCAGGCGAAACATGTTGTGGTTGTTAAAGTCATTGGACGCACTGGATCCAGAGGGCAAGTGACTCAAGTTAGAGTCAAGTTTTTGGACGATCATAACCGTTATATCATGAGGAATGTGAAAGGACCGGTGAGAGAAGGAGACATTCTTACCTTGCTCGAGTCTGAAAGAGAAGCTAGAAGACTTCGCTAG 210 0.4476 MSFWMENQAKHVVVVKVIGRTGSRGQVTQVRVKFLDDHNRYIMRNVKGPVREGDILTLLESEREARRLR 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1509 69 FunFam 40S ribosomal protein S28 4 69 - -
Lele14g1509 69 ProSitePatterns Ribosomal protein S28e signature. 60 68 IPR028626 -
Lele14g1509 69 PANTHER 40S RIBOSOMAL PROTEIN S28 5 69 IPR000289 GO:0003735|GO:0005840|GO:0006412
Lele14g1509 69 SUPERFAMILY Nucleic acid-binding proteins 5 69 IPR012340 -
Lele14g1509 69 Gene3D - 4 69 IPR012340 -
Lele14g1509 69 Pfam Ribosomal protein S28e 8 68 IPR000289 GO:0003735|GO:0005840|GO:0006412
Lele14g1509 69 CDD S1_S28E 10 69 IPR000289 GO:0003735|GO:0005840|GO:0006412
Lele14g1509 69 Hamap 30S ribosomal protein S28e [rps28e]. 5 69 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1509 Lele-ChrLele14 23261400 23261766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1509 5 69 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 86.154 3.10e-34 109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g1509 14 23261400 23261766 Lele15g0838 15 4859159 4859560 hybridization
Lele14g1509 14 23261400 23261766 Lele16g0858 16 4810235 4810498 hybridization