Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1482 ATGAACCTTGATTTGAATTTGGGTCCCATTCCGGAGGCACCGGCCGATTCCATAGACAGCGAAAATGCGGTCTTAGTAGATGACTGGACCGAGCTACCTCTTCGCCGAGTCAATGACGCTCGTCGGCATAGGTCTCGACTACAATGGAGATCGCATAATCTTCTTGTCCCACCCGATGCCCAGCGGCATGTCAATCCGCCGCCCGAATCCCAAAATATTCCGATGGAATTAAATCAATTTGTGGAGACCCCTGCCATTGGAACTGCTCGGCAGGATAGTCGGGACAGTGTTGATACTGACCTAAGATCAGGGGAGGTACCAAAAGCATGTGAAAATAACAACAGCTTGACGAGGGATGAGGAATCCGAGAAGAAGGATGATGTTGATAAGGGTATTGGCAACGATGGGAGCTTTTTCGATTGTAATATCTGCTTGGACCAGGCCAAGGACCCTGTTGTGACTTGCTGTGGCCATTTGTTTTGTTGGCCTTGCCTCTATCGATGGCTACATATGCATTCAGAGGCTAAGGAATGTCCTGTTTGTAAGGGCGAGGTGTCATACAAAAATATCACCCCAATATATGGTCGTGGAAACAACGATGTTCAAGATCCTGAGGAAGATCCCGCTCTTAAAATCCCTCTCAGGCCTCATGGAAGGCGTGTTGAGAGTTTAAGATCAACCTTTCAGAGAAGTGCATCTGGAAATCCCATGGAGGAGATGATTAGGCGTCTCGGAGGAAGAGTTGATCTTGCTCGGGGTCTGGTTCGCCCGCATGATACTGAAACCGTGCGTGAAACAGCAGAGAGAACAAGCTTCTTGCTCAACAGGTTTTTGACGTCTCGAGCAATTCGGAGAGAACAAAATCCCGAGGTGTCCCCAGATGATGCAGGATATTTGACGGGAAACGGTATGAGCAATCTTGACGCAGGGGATAATCGCAGGCTGCAATCTCTTCTGCTTCGAAGAACACATTCACACAGAGCAACACTTTCGTCTTTTTCCTCAGCTTTAAGCTCTGCGGAGCGAGTGGTGGAGACATATTTCCGGAACCGTGCAGGAGCTAGAAACCAAGAACAAGTTCCACCGGTGGAGGATAGAGATTCATATTCAAGCATTGCTGCTGATATAAATTCGGAGAGTCAGGTGGAAAGTACTGCCGTAGAAATTGATTCCAGGGTATCCTTGTCCACGACATCTTCCAGAAGGAGAAACGATTCTTCTAGAGTTTCTGATGTAGATACTGGAGACTCTCGTGCTCCTAGGCCTAGGCGAAGACTGTTAACCTCCACTCCACTTTCAATACTCGGTAGTTTATGGTTGAATTCGGAAGCTCCAGCTTTTGTCGCCTCCAGGATAGGACATGTGATGGTGCTTGCTAGCACTGTTTCTCTACTGTGGAAAAATCCTAAAGGAAGGCCCTCCTCAAATGCTATTACGGTGTTCACTTGTTTGATTGTCCCTGATCACCAAGTTGTCACCAGTGGGTCGCATGTTTCCCACGTCTCGTACATGATTCGGGACGAAAGAAGTCAGCTTGGATTTGTATGA 1548 0.4787 MNLDLNLGPIPEAPADSIDSENAVLVDDWTELPLRRVNDARRHRSRLQWRSHNLLVPPDAQRHVNPPPESQNIPMELNQFVETPAIGTARQDSRDSVDTDLRSGEVPKACENNNSLTRDEESEKKDDVDKGIGNDGSFFDCNICLDQAKDPVVTCCGHLFCWPCLYRWLHMHSEAKECPVCKGEVSYKNITPIYGRGNNDVQDPEEDPALKIPLRPHGRRVESLRSTFQRSASGNPMEEMIRRLGGRVDLARGLVRPHDTETVRETAERTSFLLNRFLTSRAIRREQNPEVSPDDAGYLTGNGMSNLDAGDNRRLQSLLLRRTHSHRATLSSFSSALSSAERVVETYFRNRAGARNQEQVPPVEDRDSYSSIAADINSESQVESTAVEIDSRVSLSTTSSRRRNDSSRVSDVDTGDSRAPRPRRRLLTSTPLSILGSLWLNSEAPAFVASRIGHVMVLASTVSLLWKNPKGRPSSNAITVFTCLIVPDHQVVTSGSHVSHVSYMIRDERSQLGFV 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1482 515 CDD RING-HC_AtRMA_like 139 183 - -
Lele14g1482 515 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 203 IPR013083 -
Lele14g1482 515 FunFam Zinc finger family protein 122 195 - -
Lele14g1482 515 SUPERFAMILY RING/U-box 137 194 - -
Lele14g1482 515 MobiDBLite consensus disorder prediction 285 310 - -
Lele14g1482 515 MobiDBLite consensus disorder prediction 114 129 - -
Lele14g1482 515 Pfam Zinc finger, C3HC4 type (RING finger) 141 181 - -
Lele14g1482 515 SMART ring_2 141 181 IPR001841 -
Lele14g1482 515 MobiDBLite consensus disorder prediction 404 423 - -
Lele14g1482 515 ProSiteProfiles Zinc finger RING-type profile. 141 182 IPR001841 -
Lele14g1482 515 MobiDBLite consensus disorder prediction 383 403 - -
Lele14g1482 515 ProSitePatterns Zinc finger RING-type signature. 156 165 IPR017907 -
Lele14g1482 515 MobiDBLite consensus disorder prediction 383 425 - -
Lele14g1482 515 MobiDBLite consensus disorder prediction 86 129 - -
Lele14g1482 515 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 113 321 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1482 Lele-ChrLele14 23097044 23098940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1482 1 417 C3H Transcription Factor Family AT3G58030 48.624 6.87e-104 317