Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1461 ATGCTATATAGCCGTAGGAAGCCCACGCGTGCTGTGGATCGATGGAAGCCAGAGTCAACGTCAAATGTCATAAACATGTTTGGCAAACTAATCGTTTCGTTGTCAGCATCTTTGACCATGAAATGGGAACGAGATCTCCATTCTTGCATCACCTGTGTTTGGTTGCTTTTACGGGAATGGAATGAGCTTTCCCAGAGGGGCCATAGGATAGCATGTTTCCCCTCATTGATGGGAGCTTCCCGGTTTGAATCCTTGGAGACATCCTCGCACGCCTCAGGTTCTGTTGATTTGTTCACTGCTCAGAGAAAGGATATTAATTTACACCACTTCCCCTCCCGCTATTATTCACTAATGAGTTCCCCCTCTGCTACTGCGGCCGCCGCCTCCACCTCCCCGACGGAGTCCTTGAACGGCTTGAAATTCGGGCAGAAGATATACTTTGAGGATGTGGGCGTGGGAGGTGGCGTGAAATCCAGCGGTGGGGGTGGGGCGTCGTCGTCGTCGTCCTCAGGGCTGATCCCGCCTAAGAAGGGAAGGGGTAGTGGGGCTCAGGGGGCTCAGCCTCCGAGGTGTCAGGTGGAGGGCTGCAAAGTAGATCTGAGTGATGCCAAGGCTTACTATTCCAGACATAAAGTCTGTAATATGCACTCCAAATCACCCAGGGTCGTTGTCGCAGGTCAAGAGCAAAGGTTTTGCCAACAGTGTAGCAGGTTTCACCAGCTTTCTGAATTTGATCAAGTAAAGCGAAGTTGTCGCAGGCGACTTGCTGGTCATAATGAACGGAGGAGAAAACCCCCATCCAGCTCCTTGATGGCTTCTAGATACGGCCGACTTGCTCCAGCTAATTTTGATAACAGCAATAGCAGAGGTGGTGGATTTCTGATGGAATTCGCTTCATATCCAAAACTTAGCCTGAGAAATTCATTGCCAACCCCAACATCATCTGAGCAGCTTCCTGGGAATCCAGTTGTGACACTTCCATGGCAGGGCCATTCGGAGTCTCCATCATCGCTTTTCTTGCAAGCAGGTTGTTCTCCAGTTTGTGGGACAAGCTACTCTAGATCCAGAAATTCTTCATCAGGGGAAAGCTTCTCAGGATTGACGGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAACCAAGCTTGGGCCCCTCGAAACGGAGCACCAAGTCTTGGTACAAATAATTTGATGAACTTTGAGGACACGCCCATCACATACCTCCCCGCATCTTCTCATCATGGACACGGTACATCCCTTCGCCATCAACTTTCAAACGCCTCATGGTGTTACAAGGGCATTGATGCTGCTGCTGCTGCTGCTGATAACTGTTCTCATGACATTGGCCCTGACCTTGGCCTGGGCCACCAAATTTCGCAGCCCATCAGCAGCTCTCTCCCTGGGGAGCTTGACGTGTCACAGCAGGGCAGGAGGCATTACATGGATCTAGAGCAGTCCAGGGTGTATGACGATTCTCAGCATCACATGCACTGGTCTCTGTAG 1500 0.508 MLYSRRKPTRAVDRWKPESTSNVINMFGKLIVSLSASLTMKWERDLHSCITCVWLLLREWNELSQRGHRIACFPSLMGASRFESLETSSHASGSVDLFTAQRKDINLHHFPSRYYSLMSSPSATAAAASTSPTESLNGLKFGQKIYFEDVGVGGGVKSSGGGGASSSSSSGLIPPKKGRGSGAQGAQPPRCQVEGCKVDLSDAKAYYSRHKVCNMHSKSPRVVVAGQEQRFCQQCSRFHQLSEFDQVKRSCRRRLAGHNERRRKPPSSSLMASRYGRLAPANFDNSNSRGGGFLMEFASYPKLSLRNSLPTPTSSEQLPGNPVVTLPWQGHSESPSSLFLQAGCSPVCGTSYSRSRNSSSGESFSGLTDSSCALSLLSNQAWAPRNGAPSLGTNNLMNFEDTPITYLPASSHHGHGTSLRHQLSNASWCYKGIDAAAAAADNCSHDIGPDLGLGHQISQPISSSLPGELDVSQQGRRHYMDLEQSRVYDDSQHHMHWSL 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1461 499 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 118 467 IPR044817 GO:0003677
Lele14g1461 499 ProSiteProfiles Zinc finger SBP-type profile. 188 265 IPR004333 GO:0003677
Lele14g1461 499 Pfam SBP domain 191 264 IPR004333 GO:0003677
Lele14g1461 499 MobiDBLite consensus disorder prediction 160 174 - -
Lele14g1461 499 SUPERFAMILY SBT domain 189 270 IPR036893 GO:0003677|GO:0005634
Lele14g1461 499 MobiDBLite consensus disorder prediction 157 191 - -
Lele14g1461 499 Gene3D - 181 252 IPR036893 GO:0003677|GO:0005634
Lele14g1461 499 FunFam Squamosa promoter-binding-like protein 14 182 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1461 Lele-ChrLele14 22974390 22981412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1461 139 499 SBP-box Gene Family AT2G42200 42.520 6.10e-61 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lele14g1461 SBP 3.8e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0778 06 4816584 4818040 Lele14g1461 14 22974390 22981412 CCT
Lele07g0954 07 5711390 5715552 Lele14g1461 14 22974390 22981412 CCT
Lele08g0774 08 4831699 4833160 Lele14g1461 14 22974390 22981412 CCT
Lele14g1461 14 22974390 22981412 Lele05g0924 05 5686009 5690678 CCT
Lele14g1461 14 22974390 22981412 Lele06g0784 06 4852944 4861936 CCT
Lele14g1461 14 22974390 22981412 Lele07g0962 07 5762274 5767381 CCT
Lele14g1461 14 22974390 22981412 Lele08g0779 08 4873814 4877914 CCT
Lele14g1461 14 22974390 22981412 Lele15g0884 15 5133857 5136900 hybridization