LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele14g1442	ATGCGAAGAAACTGGCGCAGAATTCCTTCACTTGGCTTAGTGCTGATCGTTGGGCCCAAAACGACATTCGATTTTAAGAATTACAGAACTGTAAAATCGCGAGGGCGCTCTAATGAACTCAACAAACAAGCAATATTTGCTCATAATTTAAACAAGCAAACAAAGCCTATCAATCAAGATAACCAAGCCTCCGTAGAAGAGTTCCATAAGCGAAGTATACAACCAGAGCGAGAGGACAGGGTTGGTGTCTTGGTGAACCTTCGCCACAGAATTGTCACTCTGCCGCTTCGATTGGATTTGCAGCAATTAGGATCTGCAGCTTCACTGTTTGTCTGCTCGCTTTTTGAGCCTTCCATGGAGACCGATAATGGTGACACCAAGTCCAAGATGGAAGACTATGAAGTGATTGAGCAAATTGGCAGAGGAGCATTCGGCTCCGCTTTTCTTGTTCTCCATAACTCTGAGAAGAAGAAGTATGTGTTGAAGAAGATTCGCTTGACCAAGCAAACCGAGAAGTTCAAACGAACAGCTCACCAAGAGATGAACCTGATTGCAAAACTAAATAACCCATATATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGGGGAGTACATATTCATTGTAACTGGCTATTGTGAAGGAGGCGACATGGCTGAGAACATAAAGAAAGCTCGGGGATCATTCTTTCCTGAGGAGAAGGTCTGCAAATGGCTAACGCAGTTGCTGATAGCTGTGGACTACCTGCACTCTAATCGGGTACTCCATAGAGATCTTAAGTGTTCCAATATATTTCTCACCAAAGACAACGACATTCGTCTCGGCGACTTTGGACTGGCGAAGCTGCTTAATTCAGAAGACCTTGCTTCCTCGGTTGTTGGAACTCCAAACTATATGTGTCCTGAGCTGCTTGCAGATATACCCTATGGTTATAAATCTGATATCTGGTCACTTGGTTGCTGCATGTTTGAAATTGCTGCGCATCAACCAGCATTTCGTGCTCCTGATATGGCTGGGCTTATCAATAAAATAAATAGATCCTCCATTTCTCCATTGCCTATTGTTTATTCCTCTGCCTTGAAACAACTCATAAAGAGCATGCTCAGGAAAAACCCTGAACATAGACCAACAGCAGCTGAATTGTTAAGGCATCCTCTTTTACAACCATATGTTCTCCGATGTCGTAATGCATCATCTAATGTTCTTCCAGTGTATCCCATAGTCAACTCAAAGGATAAAACAAAGAGGTCTTATAAATCTGGTGGCAGAAAAGAACGTGAGGACAAAGAAGTGGGATTAGAAAATCTTTTGGTTAGGGTTCATCCATTTGAGGGAAATGAAGATCTGCCCAACAACGGAAAGCTATCAGTCTCAAGCAGTGCAGAAGACATCCTTCAGACCAGGCTGGTTGATCCTACCAGCTTCATAACTACTGAATCATCTACTAGTATCAGTGGCTCGAAGGATGGATCAACAACATCTGAATCAACCATTTGCAGCATGGGCAGGGAAGCGGACTATAAAAGTATACCTACAAGGGAGACAAATGACAATGAAATTACATCAAAGAGTATGCCAGGTTCTAAGCATGAAGAACAAGTATTTGCTGCTGAACAACTTCAAAAATCAGAAGAGCTCGACATAATTGCAGTGACCGCGAAAGTTGAAGATGCTTTTCCGAATGGAGATTTTGATAAAGCTGAAGTGCAGAGAGATGTCAATCTTGAGGACTTCAGGAAATCAACAGCATCAAGCGAAGGAAGCACTGATAAAGGTGAGTCTCTTGATGAGGAAATGTCACCACCAGCGTTGCAGCCTAGTAGTAAGGTTGAAGATAACACTGAATCAGGAGGAGGAGTCTACTTACAGAAAAGGGAAGGCCCAAATACATTTACAGAAGGCTCACATATGTGCTGGTCTTCTGAGACTAATGATACACTTGCAAGTAAGGATGAAGGCGGAGAAAAGCCATACGACCTCAGTGGCTCCATGGATAAAGAAAATGATAGTGCTTGTGTGGTTGATCAGACGCCAAGGGACAATTCATTAAGTACACTTACGGCAATAGGGGGTGATGAAGCCAAAAGCGAGTTGGATAGTTCCTGCGGGGAAAGAGCTCATGCTCTAGAGACTCTACTTGAATTATGTGCTGAGCTACTCAAGCAACAGAAACTCGAAGAGCTTGCTGGTGTGCTGAGACCATTTGGGCCTGAAGCTGTCTCTTCCAGAGAGACAGCAATATGGTTGACAAAGAGCCTCATGTCCGCACAAAAATTCGATACTGAAACCTAG	2292	0.4346	MRRNWRRIPSLGLVLIVGPKTTFDFKNYRTVKSRGRSNELNKQAIFAHNLNKQTKPINQDNQASVEEFHKRSIQPEREDRVGVLVNLRHRIVTLPLRLDLQQLGSAASLFVCSLFEPSMETDNGDTKSKMEDYEVIEQIGRGAFGSAFLVLHNSEKKKYVLKKIRLTKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDAWVEKGEYIFIVTGYCEGGDMAENIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVLHRDLKCSNIFLTKDNDIRLGDFGLAKLLNSEDLASSVVGTPNYMCPELLADIPYGYKSDIWSLGCCMFEIAAHQPAFRAPDMAGLINKINRSSISPLPIVYSSALKQLIKSMLRKNPEHRPTAAELLRHPLLQPYVLRCRNASSNVLPVYPIVNSKDKTKRSYKSGGRKEREDKEVGLENLLVRVHPFEGNEDLPNNGKLSVSSSAEDILQTRLVDPTSFITTESSTSISGSKDGSTTSESTICSMGREADYKSIPTRETNDNEITSKSMPGSKHEEQVFAAEQLQKSEELDIIAVTAKVEDAFPNGDFDKAEVQRDVNLEDFRKSTASSEGSTDKGESLDEEMSPPALQPSSKVEDNTESGGGVYLQKREGPNTFTEGSHMCWSSETNDTLASKDEGGEKPYDLSGSMDKENDSACVVDQTPRDNSLSTLTAIGGDEAKSELDSSCGERAHALETLLELCAELLKQQKLEELAGVLRPFGPEAVSSRETAIWLTKSLMSAQKFDTET	763

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele14g1442	763	PANTHER	SERINE/THREONINE-PROTEIN KINASE NEK	130	658	-	-
	Lele14g1442	763	FunFam	Serine/threonine-protein kinase Nek6	119	212	-	-
	Lele14g1442	763	FunFam	serine/threonine-protein kinase Nek6 isoform X2	213	401	-	-
	Lele14g1442	763	MobiDBLite	consensus disorder prediction	628	647	-	-
	Lele14g1442	763	ProSitePatterns	Protein kinases ATP-binding region signature.	139	162	IPR017441	GO:0005524
	Lele14g1442	763	Gene3D	Transferase(Phosphotransferase) domain 1	213	401	-	-
	Lele14g1442	763	SUPERFAMILY	Protein kinase-like (PK-like)	130	416	IPR011009	-
	Lele14g1442	763	SMART	serkin_6	133	387	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele14g1442	763	CDD	STKc_Nek	132	387	-	-
	Lele14g1442	763	MobiDBLite	consensus disorder prediction	478	500	-	-
	Lele14g1442	763	MobiDBLite	consensus disorder prediction	478	530	-	-
	Lele14g1442	763	ProSiteProfiles	Protein kinase domain profile.	133	387	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele14g1442	763	MobiDBLite	consensus disorder prediction	575	597	-	-
	Lele14g1442	763	Gene3D	Phosphorylase Kinase; domain 1	116	212	-	-
	Lele14g1442	763	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	254	266	IPR008271	GO:0004672\|GO:0006468
	Lele14g1442	763	Pfam	Protein kinase domain	133	386	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele14g1442	763	MobiDBLite	consensus disorder prediction	575	655	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele14g1442	Lele-ChrLele14	22835828	22845776	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele14g1442	139	388	MAP Kinase Kinase Kinase	AT1G53570	32.157	5.80e-36	141

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NEK	Lele14g1442		Pkinase	6.5e-67	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele05g0895	05	5519534	5524394	Lele14g1442	14	22835828	22845776	CCT
	Lele14g1442	14	22835828	22845776	Lele15g0905	15	5257321	5262008	hybridization
	Lele14g1442	14	22835828	22845776	Lele16g0923	16	5224835	5229408	hybridization