Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1440 ATGGCCGATCCTTTCTCTAATTTCTTCTCTCCTCCTTCTTCTTCTGGATTTTTCCAATTTAATCCAATCCCTTACTATTATCCTCCTCCTCCTAATCCTTCTCCAGTATCTCATCAATATCATCATCATCATCCCTATCTCCACAACTTCATCGCTTCTTCTTCGCCTGCTACTTCCCCACCTCTCAGAGAAGCCCTCCCTCTTCTCAACCTCAACCCCACTAACAAGCTACATCATGATCATAACCAGTACTCTTGCAGTACTTCCATGGAAGTGGAGGACGCTGCTCCTCCTAAGACTAAAGAAGAAGACGATGAAGAGGAAGATGAGGTAGATGATGAGAATAGTGTGACTGTTGCACTCCACATAGGCCTCCCTAGCCCTAGTGCTGCTGAGATGGCCTCTATCCTCTCTTCTGCCTCCTCTCAAGCACCAGAAGCAGTAGCAGCAGCAGCAGCAGATGGCGATGCTTTTGCTGATAATTCTAGCTCTGGACTCTCCAGGCTCAACAAGGGCCAGTACTGGATCCCTACTCCCACTCAGATTCTCATTGGTCCTACCCAGTTCTCGTGCCCTGTTTGCTCCAAAACCTTCAACCGCTACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCAGAATCACTGAGAGGTACACAACCAACGGGCATGTTGAGGCTTCCTTGTTATTGTTGTGCCCAAGGTTGCAGGAACAACATTGACCACCCAAGGGCTAAGCCCCTTAAGGATTTTAGAACCCTTCAGACACACTACAAGAGGAAGCATGGGATTAAGCCCTTCATGTGCAGAAAATGTGGCAAAGCTTTCGCTGTGAGAGGCGATTGGAGAACCCATGAGAAGAACTGTGGCAAGCTTTGGTATTGTATTTGTGGCTCTGATTTCAAGCACAAGAGGTCGCTTAAAGATCATATCAAGGCTTTTGGGAGTGGCCATGCCGCTTATGGGATCGATGGCTTCGAAGAAGAAGACGAGCCAGCATCCGAAGTAGAGCAAGATAATGAATCCACCCAGGGAATTACAAGCTAG 1065 0.4779 MADPFSNFFSPPSSSGFFQFNPIPYYYPPPPNPSPVSHQYHHHHPYLHNFIASSSPATSPPLREALPLLNLNPTNKLHHDHNQYSCSTSMEVEDAAPPKTKEEDDEEEDEVDDENSVTVALHIGLPSPSAAEMASILSSASSQAPEAVAAAAADGDAFADNSSSGLSRLNKGQYWIPTPTQILIGPTQFSCPVCSKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAQGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNESTQGITS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1440 354 ProSiteProfiles Zinc finger C2H2 type domain profile. 189 216 IPR013087 -
Lele14g1440 354 SMART c2h2final6 273 293 IPR013087 -
Lele14g1440 354 SMART c2h2final6 189 211 IPR013087 -
Lele14g1440 354 SMART c2h2final6 236 268 IPR013087 -
Lele14g1440 354 MobiDBLite consensus disorder prediction 79 116 - -
Lele14g1440 354 MobiDBLite consensus disorder prediction 100 114 - -
Lele14g1440 354 SUPERFAMILY beta-beta-alpha zinc fingers 184 211 IPR036236 -
Lele14g1440 354 PANTHER ZINC FINGER PROTEIN WIP2 40 347 IPR043584 GO:0003700|GO:0010468
Lele14g1440 354 FunFam zinc finger protein WIP2-like 188 211 - -
Lele14g1440 354 FunFam Zinc finger protein WIP2 242 324 - -
Lele14g1440 354 Gene3D Classic Zinc Finger 188 211 - -
Lele14g1440 354 ProSiteProfiles Zinc finger C2H2 type domain profile. 273 293 IPR013087 -
Lele14g1440 354 Gene3D Classic Zinc Finger 231 321 - -
Lele14g1440 354 MobiDBLite consensus disorder prediction 334 354 - -
Lele14g1440 354 ProSitePatterns Zinc finger C2H2 type domain signature. 191 211 IPR013087 -
Lele14g1440 354 SUPERFAMILY beta-beta-alpha zinc fingers 255 293 IPR036236 -
Lele14g1440 354 Pfam Zinc finger, C2H2 type 189 208 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1440 Lele-ChrLele14 22824655 22826929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1440 1 350 C2H2 Transcription Factor Family AT3G57670 61.125 1.64e-146 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele14g1440 zf-C2H2 0.0044 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0893 05 5501649 5503837 Lele14g1440 14 22824655 22826929 CCT
Lele14g1440 14 22824655 22826929 Lele15g0906 15 5272047 5274273 hybridization
Lele14g1440 14 22824655 22826929 Lele16g0924 16 5238986 5241226 hybridization