Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1434 ATGTGCTGTGATTTGGAGCGGTTAAAGCTAGCACCGTCTCCAGCAGTATATTTAATTTTGTCAAGCGCTACTCAACCTCAAAACCGGAAGATGAATCACTTGACTGTAGAAACTGAAGATAGTTTTGCAAGCCTGCTTGACCTTGCAGCCAATAATGACGTCGAGCTTTTCAAAAGATCAATTGAACTAGATCCTTCCTCTGTAGATGAGGTTGGACTGTGGTATGGTCGCCAGAAGGGGTCAAAGCAGATGGTCAACGAGCACCGAACGCCTTTGATGGTTGCTGCTACTTATGGTAGCATTGATGTCATCAAGTTGATTCTTTCATTATCTGATGCAGACATTAATCGGTCATGTGGTCTTGACAAAAGCACAGCCCTTCATTGCGCGTCATCAGGTGGGGCTGTAAATGATGTTGATGTAGTGAAACTGCTTCTGGCAGCTGGTGCTGATCCAAATTCTGTCGATGCCAATGGACGCTATCCTGTTGATGTTATCGTGGTACCTCCCAAGCGTGCACATGTGAGAATTATTCTTGAAGAACTTCTTCAAACAGATTGTTCCATGGCAGGTTGTGGTCTTAGGGTGGTAACGGCCACAACAAATTCAAACTCTCCCCCTCCATCAACTTCTCCAGAGAATGGATCTCCTTCTACACTAGAGCTCCTGAAGCTAAAGATAAAGGATGCTAACACTTTTTCTGCATCAGAGAAGAAAGAATATCCCGTTGATCCATCTCTTCCCGACATCAAAAACAGCATCTACTCAACTGATGAGTTCAGAATGTACTCTTTCAAGGTTCGACCATGTTCACGTGCATATTCACATGATTGGACCGAATGTCCTTTTGTCCACCCAGGGGAAAATGCTCGGAGAAGGGACCCGAGGAAGTTTCATTATAGCTGTGTCCCTTGTCCTGATTTTCGGAAAGGAGCTTGCCGTCGAGGAGATATGTGTGAATATGCTCATGGTGTTTTTGAGTGCTGGCTGCATCCAGCTCAATATCGGACCCGCCTCTGCAAGGATGGGACCGGTTGCTCAAGAAGAGTTTGCTTCTTTGCCCATACAGCTGAGGAACTTAGGCCGTTGTATGTTTCAACTGGTTCTGCTGTTCCATCACCACGCTCAAGCACATCTTCTGCCATGGATTTTGCTGCAGCCATGAGCCTGTTACCTGGCTCCCCTTCTTCAATTTCTGTAATGTCTCCTGCACCGTTCACTCCACCTATGTCACCCTCTGCCACTGGTATGTCACCCTCTGCCACTGGTATGTCACACTCTTCTGCTGCTTGGCCTCAACCTAATGTTCCAAACCTGCATCTGCCAGGAAGTAATATTCACTCCAGTCTTTTGAGATCTTCATTCAGTGCTAGAGATATCCCCGTGGAAGACTTTGATTTGTTGCCGGACTATGATTTTCAGCAACACCAACTACTTAATGAGATGTCTTGCCTTTCCCAGCAATCTATGAATTCTAATAACCTAAACCGTTCTGGTCGTATGAAGACCATGACCCCTTCAAATCTTGATGATCTCTTTTCTGCTGAGAGTTCTTCCCCTCGGTTTGCGGATCCAGCATTGAGTTCAGCCGTCTTTTCACCCACGCACAAATCAGCTGTCCTTAATCAGTTTCAGCAGCAGCAAAGCTTGCTTTCACCTGTGAATACAAATTTTTCTTCCAAGAATGTTGAGCATCCTTTTCTACAGGCCTCATTCCAAACGTCAGGAAGGATGTCTCCACGTAATGTGGAACCTATCTCACCAATGAGCTCTAGGCTTTCTGTGCTAGCTCAACGGGAAAAGCAGCAGCAGTTTCGTAGCCTTAGCTCTCGGGATCTTGGCTCCAACACTGCTGCTGCTATTGCTACCGCTGGTGGTTTCAATGACAGTTCTTGGTCAGAATGGGGATCCACCAACGGTAAACTAGATTGGGCTGTCAATGCTGATGAATTTGGCAAGCTCCGCAGGTCCTCGTCATTCGAGTTTGGGAGCTACGGTGAGGAGCCGGATTTATCATGGGTGCAGTCACTTGTGAAAGAATCACCAACTGAGATTAAGGAGAAATTGGTAGCAGCCGTCTCTAGCAAGGGATCGAACATGAGCACTCAAATATGA 2115 0.4634 MCCDLERLKLAPSPAVYLILSSATQPQNRKMNHLTVETEDSFASLLDLAANNDVELFKRSIELDPSSVDEVGLWYGRQKGSKQMVNEHRTPLMVAATYGSIDVIKLILSLSDADINRSCGLDKSTALHCASSGGAVNDVDVVKLLLAAGADPNSVDANGRYPVDVIVVPPKRAHVRIILEELLQTDCSMAGCGLRVVTATTNSNSPPPSTSPENGSPSTLELLKLKIKDANTFSASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTGCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMSLLPGSPSSISVMSPAPFTPPMSPSATGMSPSATGMSHSSAAWPQPNVPNLHLPGSNIHSSLLRSSFSARDIPVEDFDLLPDYDFQQHQLLNEMSCLSQQSMNSNNLNRSGRMKTMTPSNLDDLFSAESSSPRFADPALSSAVFSPTHKSAVLNQFQQQQSLLSPVNTNFSSKNVEHPFLQASFQTSGRMSPRNVEPISPMSSRLSVLAQREKQQQFRSLSSRDLGSNTAAAIATAGGFNDSSWSEWGSTNGKLDWAVNADEFGKLRRSSSFEFGSYGEEPDLSWVQSLVKESPTEIKEKLVAAVSSKGSNMSTQI 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1434 704 ProSiteProfiles Zinc finger C3H1-type profile. 304 326 IPR000571 GO:0046872
Lele14g1434 704 PRINTS Ankyrin repeat signature 141 155 IPR002110 GO:0005515
Lele14g1434 704 PRINTS Ankyrin repeat signature 88 103 IPR002110 GO:0005515
Lele14g1434 704 ProSiteProfiles Ankyrin repeat profile. 122 157 IPR002110 GO:0005515
Lele14g1434 704 Gene3D - 300 362 - -
Lele14g1434 704 MobiDBLite consensus disorder prediction 410 430 - -
Lele14g1434 704 SMART ANK_2a 87 117 IPR002110 GO:0005515
Lele14g1434 704 SMART ANK_2a 122 154 IPR002110 GO:0005515
Lele14g1434 704 FunFam Zinc finger CCCH domain-containing protein 66 257 325 - -
Lele14g1434 704 Pfam Ankyrin repeats (3 copies) 75 156 IPR002110 GO:0005515
Lele14g1434 704 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 304 324 IPR000571 GO:0046872
Lele14g1434 704 MobiDBLite consensus disorder prediction 413 430 - -
Lele14g1434 704 MobiDBLite consensus disorder prediction 199 218 - -
Lele14g1434 704 SUPERFAMILY Ankyrin repeat 45 178 IPR036770 -
Lele14g1434 704 ProSiteProfiles Ankyrin repeat region circular profile. 122 156 - -
Lele14g1434 704 Gene3D - 38 177 IPR036770 -
Lele14g1434 704 SMART c3hfinal6 299 325 IPR000571 GO:0046872
Lele14g1434 704 SMART c3hfinal6 334 357 IPR000571 GO:0046872
Lele14g1434 704 PANTHER UNKEMPT FAMILY MEMBER 47 681 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1434 Lele-ChrLele14 22784187 22786301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1434 36 681 C2H2 Transcription Factor Family AT5G12850 55.167 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele14g1434 Ank_2 1.1e-09 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g1434 14 22784187 22786301 Lele05g0888 05 5461226 5462056 CCT
Lele14g1434 14 22784187 22786301 Lele06g0744 06 4579842 4580672 CCT
Lele14g1434 14 22784187 22786301 Lele07g0927 07 5533202 5534032 CCT
Lele14g1434 14 22784187 22786301 Lele08g0744 08 4632222 4633049 CCT
Lele14g1434 14 22784187 22786301 Lele15g0912 15 5313615 5315648 hybridization
Lele14g1434 14 22784187 22786301 Lele16g0931 16 5282121 5284124 hybridization