Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1401 ATGGCGTTCAGAGGTAAGGAGATGATGAAGAAAGTTCTAAAGAAAGTGGGAGAGCACAATTTGGCTCCTGGAGTGAAGGAATCTTTGGAAAAATGCATGCCCAAAAGCAAGGTCGTTATGGGTCGCGCTAAACGCGGTATCTATGCCGGACGACACATCCAGTTTGGCAATCGCGTCAGTGAAGATGGCGGTAACAAGACAAGGAGAACTTGGAAACCTAATGTTCAAGAGAAACGGCTCTTCAGTTATATCCTGGATCGCCACATTCGTGTTAAGGTTACCACACATGCGCTTCGTTGCATTGACAAGGCAGGTGGGGTTGATGAATACTTCTTGAAAACTCCATATCACAAGTTGGACACAGAACTTGGCCTCTTTTGGAAAGCCAAGATAGAGAAGCTGTATGAGGAACTTGGGAAGATGGAAGTCGTATTCTTTTCACCCGAGGATGAGCAGAAGTTTGAACAGGGTTTTAAAGAATTGAAACTGTCTGAAAGGGAAGCACGGAGGGAATTCCGAAGGAAAATGTATACCGGGATGAACAAACACAAGCAGATTGAGCTAGAACATAGAGATGAACAATCTACTGATAAAGGAGGTGGTGGAATCGAGGAAGGGATATCACATGAATCTGAAGAACAGTTGGCTGCGGTTTCATACGGTCTAGCTGCTGACAATCTCGGAGCTGGAAGTTTAGGCACTGTTTCTGCTCCGACGAGTAAAGGCATTATGGAAGTCGAGGAGGAACAGACTACGCCACCTGTTCCTGCAGAAACCTCTGTACCATCATCTGATGCTCAAAGCATGGTTTCTCCTGTTCCTGCTGTGCTGCCCCCGCCAATGCAACCTGTAATTCCAACAGTCGTTCCACCATCTAGTGTGCCTCCTATTGCTCCAATTCCTTCAATTCCTCCCCCCACTACTCTCCGCCCTCTGGCACCACTTCCTGTTCGTCCACCATCTATTAGGCCACCCGTGTCGCAAAATGGTGAGGCTAGATCAACAGACTCTGATTCAGATCATGATGACTCAGCTCCTGGGATAAACAAGGGTACAGGGGAGTATGAGATATCAGAAGAGAGTAGACTGGTAAGAGAGAGGCAGGAGAAGGCAATGCAGGAACTTATGATGAAGAGGCGTGCTGCTGCTCTGGCTGTTCCAACAAATGACATGGCTGTGCGAGCTCGTCTCCGGCGTCTTGGTGAACCCATCACTCTTTTCGGTGAAAGGGAGATGGAGAGAAGGGACAGGTTGCGAATGATTATGGCAAAGTTGGATGCTGAAGGTCAACTTGAAATACTGATGAAAGCTCATGAAGCTGAAGAGGCTATTGCTTCTGCTGCAAAAGAAGAAGCCGAGGAAGACCTACAGTATCCCTTTTACACTGAAGGGTCAAAGGCCCTCCTGGATGCCAGAGTTGATATTGCTAAATTTTCTTTAGTAAGAGCAGCAACACGTCTTAATCGTTCTCGAAGAAGAAGAGATGATCCAGATGAAGATATAGATGCTGAAATAGATTGGGCACTGAAGAAGGCAGAGAACTTGGTTCTTGATTGCAGTGAGATCGGAGATGATCGGCCACTTTCTGGTTGCTCGTTCTCAGCAGATGGAAAATGCCTTGCTACCTGTTCTCTGACTGGAGCTGCGAAGCTTTGGAGCATGCCTGAAGTTAAAAAAATTTCTACCTTAAAGGGGCACACAGAGCGCTCTACTGATATTGCTTACTCTCCTGTGCATAACCATTTAGCAACTGCCTCTGCTGACCGCACTGCAAGGTATTGGAATGATCAAGGGTCTCTTTTAAAGACATTTGAGGGTCATCTTGACCGTCTTGCTCGCATTTCCTTTCATCCATCTGGGAAGTACTTGGGCACTGCTAGCTTTGACAAGACATGGAGATTGTGGGACATAGAAACAGGAGAGGAGTTGCTTCTCCAAGAAGGTCACAGTAGGTGTGTATATGGGTTAGCTTTCCACCATGATGGATCATTAGCTGCATCTTGTGGACTGGATTCACTTGCTCGAGTTTGGGACCTTCGTACTGGGAGAAGTATTCTTGCACTAGAAGGTCACGTCAAACCGGTTCTTGGCGTCAGTTTTTCACCTAATGGTTATCATTTAGCCACAGGTGGTGAAGACAACACCTGTCGCATTTGGGATTTAAGAAAGAAAAAATCCTTGTACATCATTCCAGCTCACTCTAATTTAATATCACAAGTCAAATTTGAGCCACAAGAGGGTTACTTTTTGGTAACAGCTTCGTATGATATGACAGCTAAGGTATGGTCAGCTCGTGATTTTAAGCCTGTCAAAACGTTATCTGGCCATGAAGCAAAAGTTACGTCTGTAGATGTTCTTGGAGATGGACGGTATATTGCTACTGTCTCCCATGATCGAACCATAAAGCTGTGGTCCAGCAACACGGCTAGTGAACAAGCTATGGATGTTGACTGA 2454 0.4601 MAFRGKEMMKKVLKKVGEHNLAPGVKESLEKCMPKSKVVMGRAKRGIYAGRHIQFGNRVSEDGGNKTRRTWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGVDEYFLKTPYHKLDTELGLFWKAKIEKLYEELGKMEVVFFSPEDEQKFEQGFKELKLSEREARREFRRKMYTGMNKHKQIELEHRDEQSTDKGGGGIEEGISHESEEQLAAVSYGLAADNLGAGSLGTVSAPTSKGIMEVEEEQTTPPVPAETSVPSSDAQSMVSPVPAVLPPPMQPVIPTVVPPSSVPPIAPIPSIPPPTTLRPLAPLPVRPPSIRPPVSQNGEARSTDSDSDHDDSAPGINKGTGEYEISEESRLVRERQEKAMQELMMKRRAAALAVPTNDMAVRARLRRLGEPITLFGEREMERRDRLRMIMAKLDAEGQLEILMKAHEAEEAIASAAKEEAEEDLQYPFYTEGSKALLDARVDIAKFSLVRAATRLNRSRRRRDDPDEDIDAEIDWALKKAENLVLDCSEIGDDRPLSGCSFSADGKCLATCSLTGAAKLWSMPEVKKISTLKGHTERSTDIAYSPVHNHLATASADRTARYWNDQGSLLKTFEGHLDRLARISFHPSGKYLGTASFDKTWRLWDIETGEELLLQEGHSRCVYGLAFHHDGSLAASCGLDSLARVWDLRTGRSILALEGHVKPVLGVSFSPNGYHLATGGEDNTCRIWDLRKKKSLYIIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSARDFKPVKTLSGHEAKVTSVDVLGDGRYIATVSHDRTIKLWSSNTASEQAMDVD 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1401 817 MobiDBLite consensus disorder prediction 244 272 - -
Lele14g1401 817 PANTHER WD40 REPEAT PROTEIN 337 806 - -
Lele14g1401 817 ProSitePatterns Trp-Asp (WD) repeats signature. 707 721 IPR019775 -
Lele14g1401 817 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 563 595 - -
Lele14g1401 817 ProSiteProfiles Trp-Asp (WD) repeats profile. 646 687 IPR001680 GO:0005515
Lele14g1401 817 ProSiteProfiles Trp-Asp (WD) repeats profile. 688 729 IPR001680 GO:0005515
Lele14g1401 817 SMART pr04_2 388 441 IPR014906 -
Lele14g1401 817 MobiDBLite consensus disorder prediction 184 205 - -
Lele14g1401 817 MobiDBLite consensus disorder prediction 253 270 - -
Lele14g1401 817 Gene3D - 502 686 IPR015943 GO:0005515
Lele14g1401 817 ProSiteProfiles Trp-Asp (WD) repeats profile. 730 772 IPR001680 GO:0005515
Lele14g1401 817 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 688 722 - -
Lele14g1401 817 ProSitePatterns Trp-Asp (WD) repeats signature. 623 637 IPR019775 -
Lele14g1401 817 Gene3D - 364 432 IPR036285 -
Lele14g1401 817 ProSiteProfiles Trp-Asp (WD) repeats profile. 773 814 IPR001680 GO:0005515
Lele14g1401 817 Pfam pre-mRNA processing factor 4 (PRP4) like 393 419 IPR014906 -
Lele14g1401 817 ProSiteProfiles Trp-Asp (WD) repeats profile. 604 645 IPR001680 GO:0005515
Lele14g1401 817 MobiDBLite consensus disorder prediction 303 360 - -
Lele14g1401 817 ProSitePatterns Trp-Asp (WD) repeats signature. 665 679 IPR019775 -
Lele14g1401 817 Coils Coil 435 455 - -
Lele14g1401 817 SUPERFAMILY L28p-like 43 119 IPR034704 -
Lele14g1401 817 FunFam U4/U6 small nuclear ribonucleoprotein Prp4 731 807 - -
Lele14g1401 817 Pfam Ribosomal L28 family 45 104 IPR026569 GO:0003735
Lele14g1401 817 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 773 805 - -
Lele14g1401 817 FunFam 54S ribosomal protein L24 47 118 - -
Lele14g1401 817 SUPERFAMILY WD40 repeat-like 520 804 IPR036322 GO:0005515
Lele14g1401 817 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 604 641 - -
Lele14g1401 817 Gene3D Ribosomal protein L28/L24 47 117 IPR037147 GO:0003735
Lele14g1401 817 PRINTS G protein beta WD-40 repeat signature 707 721 IPR020472 -
Lele14g1401 817 PRINTS G protein beta WD-40 repeat signature 582 596 IPR020472 -
Lele14g1401 817 PRINTS G protein beta WD-40 repeat signature 623 637 IPR020472 -
Lele14g1401 817 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 646 683 - -
Lele14g1401 817 SMART WD40_4 556 595 IPR001680 GO:0005515
Lele14g1401 817 SMART WD40_4 723 763 IPR001680 GO:0005515
Lele14g1401 817 SMART WD40_4 681 720 IPR001680 GO:0005515
Lele14g1401 817 SMART WD40_4 597 636 IPR001680 GO:0005515
Lele14g1401 817 SMART WD40_4 766 805 IPR001680 GO:0005515
Lele14g1401 817 SMART WD40_4 639 678 IPR001680 GO:0005515
Lele14g1401 817 SMART WD40_4 512 553 IPR001680 GO:0005515
Lele14g1401 817 CDD WD40 527 805 - -
Lele14g1401 817 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 730 763 - -
Lele14g1401 817 ProSiteProfiles Trp-Asp (WD) repeats profile. 563 595 IPR001680 GO:0005515
Lele14g1401 817 Pfam WD domain, G-beta repeat 647 678 IPR001680 GO:0005515
Lele14g1401 817 Pfam WD domain, G-beta repeat 598 636 IPR001680 GO:0005515
Lele14g1401 817 Pfam WD domain, G-beta repeat 768 805 IPR001680 GO:0005515
Lele14g1401 817 Pfam WD domain, G-beta repeat 686 720 IPR001680 GO:0005515
Lele14g1401 817 Pfam WD domain, G-beta repeat 559 595 IPR001680 GO:0005515
Lele14g1401 817 Hamap 50S ribosomal protein L28 [rpmB]. 42 110 IPR001383 GO:0003735|GO:0005840|GO:0006412
Lele14g1401 817 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 503 687 - -
Lele14g1401 817 MobiDBLite consensus disorder prediction 303 323 - -
Lele14g1401 817 Gene3D - 687 816 IPR015943 GO:0005515
Lele14g1401 817 SUPERFAMILY PRP4-like 371 426 IPR036285 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1401 Lele-ChrLele14 22558628 22566204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1401 608 804 U-box Gene Family AT2G33340 23.982 2.47e-11 65.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g1401 14 22558628 22566204 Lele15g0952 15 5543393 5550662 hybridization
Lele14g1401 14 22558628 22566204 Lele16g0972 16 5511224 5515602 hybridization