Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1345 ATGGAAGATGATCAATTCATCGACCCAGCAGACCAAGCTTCTCAAGGTCCTTCGTCGGAAAAATACCTGCTCGGCTTCGTCTGCGCCCACGTCGTTGGGATTAAACACTATTCTGGTACCATCAGTGGCCGTGAAATGGTTGGTCTGGTCCGTGAACCTCTCAACCCCTACGATGAGAACGCCATTAAGGTCCTCAACACTCGAGAAACTCAGGTTGGGCATATTGAGCGCTCCGTCGCTGCCGTCCTGGCTCCCTTGATAGACTCCGAACTTATCATTGTGGAAGGCATTGTGCCCAAAACGTACTCTGGTAACAAATTCAAGATTCCTTGTCAAATCCATATATTTGCGACGATCGAGGCTTTTCCAATCGTGCAAGATGTGATTTCAGAAGGGGGTTTAGCTTTAATTTTAGTATCTGATGCGGCGTCTACGTTGTCAGAGTCTATGGCTATGAAAGATAAGAAGGCTAAGAAAGAGTCGAAGACCGTAGATGATATTTTTAAGTTGGTTGATGAGAATATTAGCAAAAAGGGTGCATTGGAAGCTTTGGAGCCCCCTCGAAGTGTCATCAAGTCTAATCTTTTCCTACATCAAAAGGAAGGCTTAGGGTGGTTAGTTCATAGAGAGAATTCTGGTGAATTGCCGCCATTCTGGGAAGAGAAAGATGGAGGCTTTGTGAATGTTTTGACTAATTATCATACGGACACAAGGCCGGAGCCTTTGCGAGGTGGTATTCTAGCAGATGATATGGGATTAGGCAAGACCTTAACTTTACTTTCTTTGATTGCTCTTGATAAGGATTCTATTGCTCTAAATATGGAAGAAGGAAAGCATGATGAAATGGGGGAGCACGATGAAGGATTCGCTGTCTCATTTGGTAAGAAGGGTAAGAGGAGAAGAACAAATAAACAGACCACTGGATCCGAAAAAAGACGCAAGACTGGGAGTACTTCTTCAAAGGGCTATGTAAGTGGAAAATCTGTTGCTGTAGCTGGCAACCCTTCAACTGGCTTGGGTATAAAGACTACACTGGTTGTGTGCCCCGCTTCTGTAATTTCAACATGGATAACACAGTTAGAAGAACATACTAAACCAGGCACATTGAAGACGTACATGTATTATGGTGATAAAAGGTCCAAGGATGCTGAAGAACTTAAGATGTATGATTTAGTATTAACCACTTACACCACTTTAGCTACTGAAGAATCTTCTCCAGACTCACCCATTAATAGAGTAGAGTGGTGGAGGGTCATTTTGGATGAAGCACATGTAATAAAAAATGTGAATGCTAAACAAAGTCAAGCTATGATGAAAATTGCAGCTAAACGGAGGTGGGCTGTTACAGGGACACCAATTCAAAATGGTTTATATGATTTATTTTCGCTCATGGCATTTTTACGCTTTCAACCATTTTCAACAAAGAGTTATTGGCGGAGCTTAGTGCAACTTCCTCTAGCTGGAAGAAACCCAAACGGACTCTTACGTCTTCAGGTTTTGATGGCAACAATTTCACTGCGAAGAACAAAAGATAAAGCATTGGTAGCTTTGCCTCCTAAAACTGTAGAGACTTGTTTTGTTGAACTTCTTGAGGAAGAACGGAAACTGTATGATCAGATAGAATCGAGAGCAAAGAACATAGTGGCAGGTTATTTAAATGAGGGAAGCTTAATGCGCAACCATTCCACTGTACTCGGTATAATTTTACGGCTTCGCCAAATTTGTACTGACATGGCATTGTGCCCTTCAGATCTCAAATCTTTACTCCCTTCTAATAACATTGAAGATGTTTCCAATAACCCGGAATTGCTGGAAAAGTTGGTAGAGGTGCTGCAAGATGGTGAAGATTTTGACTGTCCAATATGTATTTCTCCACCAACTGACATTGTAATTACCTGCTGTGCTCACATATTCTGCCAAGCTTGTATTCTGAAAACCCTGCAGCGGAGCAAGGCCTGTTGTCCCCTTTGTCGTCACCCCCTCAAAGAAAATGACTTGTTCTCCGCCCCACCTCAATCTTCTGATGCTGATGATTCTGGACTCTCCTCGGACAAAACAAGAGTATCCTCTAAGGTGTCTGCTCTGGTGAAACTTCTTGTTGCCTCAAGGGATCAACATCCAGCTACAAAATCAGTTGTGTTTTCTCAATTTCGTAAGATGCTGATTTTACTGGAACAGCCTCTAAAAGCAGCTGGTTTCAAAACACTACGCCTTGACGGGACCATGAATGCCAAACAAAGGGTTCGAGTTATGGAAGAATTTGCAGCTGGAGGAACAGATGGGCCTATGGTTCTACTGGCAAGCCTCAAGGCTTCAGGCACAGGTATAAATCTGACAGCAGCCTCCAGAGTATACTTATTGGAGCCATGGTGGAACCCAGGAGTGGAGGAACAAGCTATGGATCGTGTGCACCGCATTGGACAGAAAGAGGAGGTGAAGATTGTAAGACTGATTGCTAAAAACAGCATTGAAGACAGGATATTGGAGTTGCAAGAGAAGAAGAAGCAGCTTGCAAAGGAAGCGTTTGGAAAGAGGAGGGCAAAGGATAGTAGGGAAGTTGGAGGGGATGATTTCCGAATGCTCTTGGCCTTGGAATTTGTGTTTGATGATTCAGTAGTAGTCGGAGATGGAATAGAGACAGATCAGCAGGCCAATGAACTGAGAAACAACAGCGAAGATGATAGCGAAAATATTCTCTATGTTTTGCGGATTAAGAATGAACTTGAGAACAACGAATTGACGGAGACTAAAATCTACGAGTCACTAAGGAAGCTGCAATTGGCAGTTCGATCTGTTGGTGTTATGAAGCCGATGGAAGTCAATGATTGTGGAGTTTAAAAATCCAAAAACCCTGTGCCTAGCGTTGTTCTTGAAGCGTGGCGAGAATTTCCTTCTGTTGAATTTGTTCCTCAGCCTCCAGCTTTTGTTATCAAGTTCCTTGAAGACATGGATGATTATGAAAATGGTTCCGGTAATAAGGACAATAATGAGAATGGGACTGAGGAGGGGCAAAAGAATGCTGCCAAAGAAAACGAGACTGATGTGAAGCTGAAAGAAGAATCAATCAAGAGAGAGAAAACAAGGCAAGAATCGGTTGAGAAATTCATAGAGCGCAGATCCAATGGAGCATCCAATAACAAAAACCACGTCAAAGTTGAAAAGACGATGGAGAAGAACCCTTCAATGGGAAACAATGAAAGAAAACTGGAGGAGCACCTAATCGAGGACGCAGAGTTCATCACGCCCACCACCAGGCGGCCTAAAGTAATACCACCGAAGGAAGAATCCATTCGTCAGAAACCAAACCCTAAGCTCCCAAAGACTGAACATCCCTCAGACAGAGATCATCAGAAGCCTCCAAGAGTGAAGAAAGAGTTTATTGCCCCAAAGCAAGTGAACACAATGGGAACGGGTGTCTGCACGTGGGATCTGCAATCTTGGTACAACGCGCACCGCAGAGTAGAGGACCCTGTTGGAGTCGGTTCTTCGACATCTGGGAGCCTCATCGGGATTGATCCACCTTGTGAGTTTTGTGGGACGACCATGAAGTCCGGGTCACTAGAATACTGGAGGAATTACTTCCGGACTGCAAATTCTGATATATTCGATATAATTGACCATGCGATCATGGTGGCGGTTTCCGATTGTCCGAAGGAATTTCGATTTCGAAGAGACGGGATTGCGGAACGTTTGTTTTCTTGTAGATTGACTCGTTGTGTGGGATGTGATCGATTAGAGTTGGCGGTTTCCGCGGATGATGAGGAAGATGGAGGTTGTAAGAGTGGCTTTGATCGAGAAGCTACTGAATTAGAAGCAGGCGCTAGTAAAGAGAGCAAGGTCAATAGTAGCAGAGACGATCATGGGGAGATGAACAGGAACCGATTTAGCAATTTTAGTTTTGGAGAAGCTGAGGCATTGACTGATGAGATTGAAGAAGAGTCTCAGATGGTTGGGGAGGTTTTGAGGATCAAAGAGATTCTCCATAACAGCAAGGAAGAGCCTGATTCAGTGTTATTTGAGTCATTGAGGAGGCTCCAGCTGCTGGCACTGACGGTGGATCTTCTCAAGGGAACTGAGATTGGAAAGGCTGTCAATCCTCTCAGGAAGCACGGATCAAAGGAGATCCGTCAACTTGCACGAACTCTTATCGATGGCTGGAAAGAAATGGTAGATGAATGGGTCAAGTCCACAGCAGCTATAGCAGGTTCAGCAGAAGGCACCCCAGATTCAGTTAATCCATCAGTCGTTGATGAAGAGGAAGGGCTTCCTTCGCCTCCTATGGATGAAGGGGCTTTTCTTGCAGCTCCACCCGGTCCAATGGAACTATCACAGTTCTTTGATGGCATGGATGATGATGGAAATTTTCGACAAAGTGGGGAATTTAACAAGACTCGCGAACACATCAGGAGACCATCTATGGATAGTCAAAACGTAGCAAAGAGAAAACCACAGGCTTCCAGTGGGTCCAAGGAGAGTAAATGTCATCAAACGAAAAAAAATGAGGTTGCTATGAGACAGAGTAAACCGGTCTGCACTGATTCTGGCCCTGGCAGACCACCAAAATCCAGCTTGCAGCAAAAAAGCAACACAGGAGCAAAGATGCAGCAGAAACAAGAGAAGAGTACTATCCCAAAGAGGCCTCTTGTCGCTCAGCAAGATAAATTCAAGGGTTCAGATGATGTTTCAGTCCAAGTAAAACTAGAAGCTACTAAGAGGAAACTTCAGGAGTCTTATCAACAAGCTGAAAATGCCAAGAAGCAGCGAACAATACAGGTTATGGAGTTGCATGATCTTCCAAAACAGGGGAATGGCCACCGAAATCCACAGTTCAAGCCCGGGAACCTCAACAAGCAGTGGGCCCACGGACGAAGATAG 4875 0.4437 MEDDQFIDPADQASQGPSSEKYLLGFVCAHVVGIKHYSGTISGREMVGLVREPLNPYDENAIKVLNTRETQVGHIERSVAAVLAPLIDSELIIVEGIVPKTYSGNKFKIPCQIHIFATIEAFPIVQDVISEGGLALILVSDAASTLSESMAMKDKKAKKESKTVDDIFKLVDENISKKGALEALEPPRSVIKSNLFLHQKEGLGWLVHRENSGELPPFWEEKDGGFVNVLTNYHTDTRPEPLRGGILADDMGLGKTLTLLSLIALDKDSIALNMEEGKHDEMGEHDEGFAVSFGKKGKRRRTNKQTTGSEKRRKTGSTSSKGYVSGKSVAVAGNPSTGLGIKTTLVVCPASVISTWITQLEEHTKPGTLKTYMYYGDKRSKDAEELKMYDLVLTTYTTLATEESSPDSPINRVEWWRVILDEAHVIKNVNAKQSQAMMKIAAKRRWAVTGTPIQNGLYDLFSLMAFLRFQPFSTKSYWRSLVQLPLAGRNPNGLLRLQVLMATISLRRTKDKALVALPPKTVETCFVELLEEERKLYDQIESRAKNIVAGYLNEGSLMRNHSTVLGIILRLRQICTDMALCPSDLKSLLPSNNIEDVSNNPELLEKLVEVLQDGEDFDCPICISPPTDIVITCCAHIFCQACILKTLQRSKACCPLCRHPLKENDLFSAPPQSSDADDSGLSSDKTRVSSKVSALVKLLVASRDQHPATKSVVFSQFRKMLILLEQPLKAAGFKTLRLDGTMNAKQRVRVMEEFAAGGTDGPMVLLASLKASGTGINLTAASRVYLLEPWWNPGVEEQAMDRVHRIGQKEEVKIVRLIAKNSIEDRILELQEKKKQLAKEAFGKRRAKDSREVGGDDFRMLLALEFVFDDSVVVGDGIETDQQANELRNNSEDDSENILYVLRIKNELENNELTETKIYESLRKLQLAVRSVGVMKPMEVNDCGVXKSKNPVPSVVLEAWREFPSVEFVPQPPAFVIKFLEDMDDYENGSGNKDNNENGTEEGQKNAAKENETDVKLKEESIKREKTRQESVEKFIERRSNGASNNKNHVKVEKTMEKNPSMGNNERKLEEHLIEDAEFITPTTRRPKVIPPKEESIRQKPNPKLPKTEHPSDRDHQKPPRVKKEFIAPKQVNTMGTGVCTWDLQSWYNAHRRVEDPVGVGSSTSGSLIGIDPPCEFCGTTMKSGSLEYWRNYFRTANSDIFDIIDHAIMVAVSDCPKEFRFRRDGIAERLFSCRLTRCVGCDRLELAVSADDEEDGGCKSGFDREATELEAGASKESKVNSSRDDHGEMNRNRFSNFSFGEAEALTDEIEEESQMVGEVLRIKEILHNSKEEPDSVLFESLRRLQLLALTVDLLKGTEIGKAVNPLRKHGSKEIRQLARTLIDGWKEMVDEWVKSTAAIAGSAEGTPDSVNPSVVDEEEGLPSPPMDEGAFLAAPPGPMELSQFFDGMDDDGNFRQSGEFNKTREHIRRPSMDSQNVAKRKPQASSGSKESKCHQTKKNEVAMRQSKPVCTDSGPGRPPKSSLQQKSNTGAKMQQKQEKSTIPKRPLVAQQDKFKGSDDVSVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGNGHRNPQFKPGNLNKQWAHGRR 1624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1345 1624 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 148 861 - -
Lele14g1345 1624 MobiDBLite consensus disorder prediction 1050 1064 - -
Lele14g1345 1624 Gene3D - 166 281 IPR038718 -
Lele14g1345 1624 MobiDBLite consensus disorder prediction 277 327 - -
Lele14g1345 1624 MobiDBLite consensus disorder prediction 1079 1123 - -
Lele14g1345 1624 CDD RING-HC_HLTF 618 658 - -
Lele14g1345 1624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 490 IPR027417 -
Lele14g1345 1624 SMART TFS2_5 1317 1392 IPR003617 GO:0005634
Lele14g1345 1624 SMART helicmild6 722 807 IPR001650 -
Lele14g1345 1624 MobiDBLite consensus disorder prediction 1401 1553 - -
Lele14g1345 1624 ProSiteProfiles TFIIS N-terminal domain profile. 1318 1393 IPR017923 -
Lele14g1345 1624 SMART HIRAN_2 24 119 IPR014905 GO:0003676|GO:0008270|GO:0016818
Lele14g1345 1624 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1309 1401 IPR035441 -
Lele14g1345 1624 MobiDBLite consensus disorder prediction 985 1064 - -
Lele14g1345 1624 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 694 854 IPR001650 -
Lele14g1345 1624 MobiDBLite consensus disorder prediction 277 294 - -
Lele14g1345 1624 Gene3D - 17 136 - -
Lele14g1345 1624 ProSiteProfiles Zinc finger RING-type profile. 619 658 IPR001841 -
Lele14g1345 1624 Coils Coil 820 840 - -
Lele14g1345 1624 MobiDBLite consensus disorder prediction 1518 1542 - -
Lele14g1345 1624 ProSitePatterns Zinc finger RING-type signature. 634 643 IPR017907 -
Lele14g1345 1624 Gene3D - 518 906 IPR027417 -
Lele14g1345 1624 Pfam Helicase conserved C-terminal domain 691 807 IPR001650 -
Lele14g1345 1624 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 236 470 IPR014001 -
Lele14g1345 1624 MobiDBLite consensus disorder prediction 1595 1624 - -
Lele14g1345 1624 Pfam TFIIS helical bundle-like domain 1342 1390 IPR017923 -
Lele14g1345 1624 Coils Coil 1564 1591 - -
Lele14g1345 1624 SMART ring_2 619 657 IPR001841 -
Lele14g1345 1624 MobiDBLite consensus disorder prediction 998 1037 - -
Lele14g1345 1624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 509 864 IPR027417 -
Lele14g1345 1624 Gene3D - 326 509 IPR038718 -
Lele14g1345 1624 Pfam HIRAN domain 25 103 IPR014905 GO:0003676|GO:0008270|GO:0016818
Lele14g1345 1624 SMART ultradead3 191 482 IPR014001 -
Lele14g1345 1624 Pfam Zinc finger, C3HC4 type (RING finger) 619 657 IPR018957 GO:0046872
Lele14g1345 1624 SUPERFAMILY RING/U-box 604 664 - -
Lele14g1345 1624 CDD TFIIS_I 1319 1391 - -
Lele14g1345 1624 MobiDBLite consensus disorder prediction 1453 1476 - -
Lele14g1345 1624 CDD SF2_C_SNF 684 818 - -
Lele14g1345 1624 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 601 684 IPR013083 -
Lele14g1345 1624 Pfam SNF2-related domain 198 578 IPR000330 GO:0005524|GO:0140658
Lele14g1345 1624 MobiDBLite consensus disorder prediction 1486 1502 - -
Lele14g1345 1624 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1315 1402 IPR035441 -
Lele14g1345 1624 MobiDBLite consensus disorder prediction 1270 1290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1345 Lele-ChrLele14 22230570 22246431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1345 3 864 RAD5 or RAD16-like Gene Family AT5G05130 61.239 0.0 1079
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele14g1345 SNF2_N 7.8e-76 CL0023