Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1309 ATGGGGAGGAAGCGAAAGCTAACGCCAAAACCTGCAGAATCTGCTGAACCCCCATTGAAGCAACTGCATCAACAACAGGAGGAGCAGCAATATGATCCAGAAGCGGGCCAAACTGTTGAAGAACAAGACAATGGAGCCGATTACGAAGAAGTTGAAGTGGAAGAGGAGGAGGAGGAGGAGGTAGAAGAAGAGGAAGAGGAAGAGGAAGAGGAGGAACAAGAACCAGGAGAAGGATCCGCAGACGATAACACAAATCCCGATCACGCTCAAGATGAGAATGATCAGGCATCGAAGGCCCAGACGACAGCAGCGGCTGGAACATCAGTAATCGGTCAATATGGAAAGGACGACGACGATGAAGAGCCAATACATAAGCTTCTGGAACCGTTCAGCAAGGAACAAATTTTAAATCTGCTGTGCGAAGCGGCGAATAACCATCGCGATGTAGGGGATCGGGTCCGAAAGGTGGCTGACGAGGACCCCGCTCATCGAAAAATATTCGTGCACGGCCTCGGATGGGACACAAACGCTGATACTCTCATCAACGTTTTCAAGCAGTACGGTGAAATTGAAGATTGCAAGGCGGTATGTGATAAGGTATCCGGTAAATCCAAGGGCTATGGCTTCATCCTCTTCAAATCGCGTCGTGGAGCTCGCAATGCCCTGAAGCAACCGCAGAAGAAGATCGGGAACCGAATGACCGCCTGCCAGCTAGCTTCGGTTGGGCCGGTTCAACAGCCAGTCGCTGCACAATCAACCTCAGCACAACAAGTATCAGAGTATACCCAAAGGAAGATTTACGTCAGTAATGTTGGGGCCGATTTGGATCCTCAGAAATTGCATGTGTTTTTTTCGAAGTTTGGGGAGATCGAGGAAGGACCATTAGGGCTTGATAAGCTGACTGGGAAACCAAAAGGGTTCTGCTTGTTTGTGTACAGGAGCGTTGAGAGTGCCAGAAAGGCGCTGGAAGAGCCCCACAAGGAATTTGAGGGCCATATTCTGCACTGTCAGAAGGCAATAGATGGTCCGAAACCGGGAAAGCCTCAATATCAGCAACATCAGAATCCTCAGAGAACCCAATTCCAGAGAAATGAGTCCACAACACCTGTGGGTGGGGCTGCTACCGGACAAGGGCACCTGATGGCGCCAGCTGGACCTGGTATTGGACTTAACCCACAGGCGGCGGCTGCACAGACCCTAAACCCAGCTCTTGGGCAGGCACTGACAGCACTGCTTGCAACCCAAGGGGCTGGCTTCGGGCTGACCAATTTATTGGGAACTCTGGGATCAGCTGGTACGGTAAACCCGGCTGTTCCTTCTGCAGGCCATGGAATGCAGGGGGACATATCCAAACCAGCAGGTGGGACAAAGTGGTTCTGGCAGAGGGCAGCATGGTGTCGGCCAATATGGTGGCGTTGCCCCTTACATGGGACACTAGGATCTTTCTGGCAGAACACATCCTATAGTCACATACGGAGTAGTCTTGTAAGATTCCGCATAAATCAGTCTTTTATTACTGGCCTGGTGATTCTTCTGAAGTTTAAGGAGCTGATGCAATGGCGTCTTTATAATGAAATGTTACTTGCGACAATGATCAGTATTTAA 1605 0.5034 MGRKRKLTPKPAESAEPPLKQLHQQQEEQQYDPEAGQTVEEQDNGADYEEVEVEEEEEEEVEEEEEEEEEEEQEPGEGSADDNTNPDHAQDENDQASKAQTTAAAGTSVIGQYGKDDDDEEPIHKLLEPFSKEQILNLLCEAANNHRDVGDRVRKVADEDPAHRKIFVHGLGWDTNADTLINVFKQYGEIEDCKAVCDKVSGKSKGYGFILFKSRRGARNALKQPQKKIGNRMTACQLASVGPVQQPVAAQSTSAQQVSEYTQRKIYVSNVGADLDPQKLHVFFSKFGEIEEGPLGLDKLTGKPKGFCLFVYRSVESARKALEEPHKEFEGHILHCQKAIDGPKPGKPQYQQHQNPQRTQFQRNESTTPVGGAATGQGHLMAPAGPGIGLNPQAAAAQTLNPALGQALTALLATQGAGFGLTNLLGTLGSAGTVNPAVPSAGHGMQGDISKPAGGTKWFWQRAAWCRPIWWRCPLHGTLGSFWQNTSYSHIRSSLVRFRINQSFITGLVILLKFKELMQWRLYNEMLLATMISI 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1309 534 SMART rrm1_1 165 237 IPR000504 GO:0003723
Lele14g1309 534 SMART rrm1_1 265 337 IPR000504 GO:0003723
Lele14g1309 534 MobiDBLite consensus disorder prediction 19 37 - -
Lele14g1309 534 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 264 340 IPR000504 GO:0003723
Lele14g1309 534 Gene3D - 155 242 IPR012677 -
Lele14g1309 534 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 52 341 - -
Lele14g1309 534 MobiDBLite consensus disorder prediction 1 121 - -
Lele14g1309 534 MobiDBLite consensus disorder prediction 43 78 - -
Lele14g1309 534 SUPERFAMILY RNA-binding domain, RBD 247 362 IPR035979 GO:0003676
Lele14g1309 534 MobiDBLite consensus disorder prediction 348 372 - -
Lele14g1309 534 Gene3D - 243 378 IPR012677 -
Lele14g1309 534 SUPERFAMILY RNA-binding domain, RBD 155 245 IPR035979 GO:0003676
Lele14g1309 534 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 266 334 IPR000504 GO:0003723
Lele14g1309 534 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 232 IPR000504 GO:0003723
Lele14g1309 534 CDD RRM_RBM24_RBM38_like 164 239 - -
Lele14g1309 534 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 241 IPR000504 GO:0003723
Lele14g1309 534 MobiDBLite consensus disorder prediction 338 372 - -
Lele14g1309 534 Coils Coil 46 74 - -
Lele14g1309 534 CDD RRM_RBM24_RBM38_like 264 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1309 Lele-ChrLele14 22026783 22029274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1309 260 381 C2H2 Transcription Factor Family AT2G19380 32.000 1.55e-11 65.1