Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1256 ATGGGGGGATCGGTGAAGTATTTAGAGAAAGTGGTGAGAGACGAGAAGGAGACGGTGGCTTTGCTGAACAGTGTGGGAGAAAATGGATATGATTTGTACATAGCAGGGAGAGGGCAAGGGAGGAGAATGTCGTTGGCACAAACGCTTGAACCTGTGCTGGACGAGCCGGCGTTGGGACCACACGGCGATACGGATTTGAATTCTGCGGCGGAGACTTCGATTTTGATATTGCAGACGCAATCTACAGGCGATGTGAATGCCAAACCTGTGCCGTATATGCTGATTTACGCAATCTACAGGCGATGTGAATGCCAAACCTGTGCCGTATATGCTTATTTTGAAGGACATGGTGATCTGATGCTACGTGGAGGCCGTATGACACGGCGCTCTCTGAGTGGAATGGACTTTTCCAGTACCAAGGATTACAGTTTAGTCACGTGTATTAATTTTACTATCTCTACACAGGAATCGTTTGAAATCCCACGTGGTCCTGGAAATGGGGACGTGGAGTTAGGCTCATATTTACGGACTTCAGGAGAACTGGGTTTGGATACTTTCTTCAAAAAGGTTAAAGAGCTTGATAAACAGTTTGAGAGGCTGGGTAAGCTTCTCAGACAGCTCCAGGATGCTCACGAGGAGTCCAAAGCAGTGACCAAAGCTCCTGCCATGAAGGATATTAAGCAGAGAATGGAGAAAGATGTTGATGAAGTTAAGAAAATTGCCCATCACATAAAAACAATAATTGAAGAATTGGACAGAGAAAACTTGGAAAATAGGCAAAAGCGTGGGTGTGGAAAAGGATCAGGTATCGACAGGTCAAGAACAGCAACCACCATTGCCTTAAAAAAGAAATTGAAGGACAAGATGGATGAGTTTCAGAGGCTGAGGGAAGTCATACATCAAGAATATCGCGAGGTTGTAGAGAGGCGTGTTTATACAGTGACGGGCACAAGAGCTGATGAAGAGACAATTGACAGATTAATTGAGACTGGAGATAGTGAACAGATTTTCCAGAATGCAATTAAGGAACATGGAAGAGGCCGGATAGTGGACACTCTAGCAGAAATTCAGGAACGGCACGAAGCAGCCAGAGACGTCGAGAGGAAGCTTCTTGATTTGCAGCAGATATATATGGATTTGGCAGTGCTGGTTGATTCACAGGGAGACATTCTTAACAACATAGAATCCCAGGTATCAAGTGCGGTAGATCATGTACAGCAAGGCAATAATGCGCTGGTGAAGGCAAAGAAGTCACAGAAGAGTTCGAGAAAATGGATGTGCATTGCTATTATAATACTTCTTGTCGTCGTCGTCGTGGTTCTTACTTCTGTCCTCAGACCATGGAGTGACAGAAGAGGGGCCTAG 1365 0.4535 MGGSVKYLEKVVRDEKETVALLNSVGENGYDLYIAGRGQGRRMSLAQTLEPVLDEPALGPHGDTDLNSAAETSILILQTQSTGDVNAKPVPYMLIYAIYRRCECQTCAVYAYFEGHGDLMLRGGRMTRRSLSGMDFSSTKDYSLVTCINFTISTQESFEIPRGPGNGDVELGSYLRTSGELGLDTFFKKVKELDKQFERLGKLLRQLQDAHEESKAVTKAPAMKDIKQRMEKDVDEVKKIAHHIKTIIEELDRENLENRQKRGCGKGSGIDRSRTATTIALKKKLKDKMDEFQRLREVIHQEYREVVERRVYTVTGTRADEETIDRLIETGDSEQIFQNAIKEHGRGRIVDTLAEIQERHEAARDVERKLLDLQQIYMDLAVLVDSQGDILNNIESQVSSAVDHVQQGNNALVKAKKSQKSSRKWMCIAIIILLVVVVVVLTSVLRPWSDRRGA 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1256 454 CDD SynN 183 340 IPR006011 GO:0016020
Lele14g1256 454 FunFam Syntaxin 132 346 446 - -
Lele14g1256 454 SMART SynN_4 178 304 IPR006011 GO:0016020
Lele14g1256 454 Gene3D - 181 307 - -
Lele14g1256 454 Coils Coil 282 302 - -
Lele14g1256 454 PANTHER SYNTAXIN 186 433 IPR045242 -
Lele14g1256 454 Gene3D - 350 445 - -
Lele14g1256 454 Pfam SNARE domain 390 441 IPR000727 -
Lele14g1256 454 SUPERFAMILY t-snare proteins 182 408 IPR010989 GO:0016020|GO:0016192
Lele14g1256 454 Coils Coil 190 213 - -
Lele14g1256 454 Pfam Syntaxin 186 388 IPR006011 GO:0016020
Lele14g1256 454 SMART tSNARE_6 348 415 IPR000727 -
Lele14g1256 454 CDD SNARE_syntaxin1-like 352 414 - -
Lele14g1256 454 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 353 415 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1256 Lele-ChrLele14 21730140 21735397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1256 157 454 SNARE and Associated Proteins AT3G03800 69.565 2.18e-142 408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g1256 14 21730140 21735397 Lele15g1094 15 6349797 6352266 hybridization
Lele14g1256 14 21730140 21735397 Lele16g1121 16 6313359 6319395 hybridization